Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C20
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    29   0.74 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    28   0.97 
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    27   3.0  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   3.9  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   5.2  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   6.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.1  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 538 ISFQVPRRAPSARTDLWSAAPSAR 467
           ISF VPRR+ S ++D++  APS +
Sbjct: 348 ISFIVPRRSESFQSDIYPPAPSGK 371


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 85  SSKMVKLSQHMLTELEKLPGVQLGDFLLQFELDEPRESVREIARRELR 228
           SSK+   + H+LT    +  +  G+F   F++++P E   + A ++L+
Sbjct: 552 SSKVSSSTSHLLTRFRNVTLLGSGEFSEVFQVEDPVEKTLKYAVKKLK 599


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 194 SRSERLPEENFEKYQKSSNQLLK 262
           S +  L +ENFEKYQ+ + ++LK
Sbjct: 191 SENANLFKENFEKYQEENAKILK 213


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 448 SPCSVLGHRNVCDVSL*NHSNALSNHRRSPDKTCTAL 338
           SP S   H  +CD     H+N +  HRR+ D    AL
Sbjct: 101 SPTSKQTHMKLCD----QHNNGIEIHRRNCDSHAEAL 133


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 549 IMLP-FLSKFQDEHPPPALISGRQHRQHVLVEHI 451
           + LP  +++F DE P P +I+G + +   L++HI
Sbjct: 677 VPLPSIITEFLDELPAPQVITGPRIQPTKLIDHI 710


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 61  QSLKINTYSSKMVKLSQHMLTELEKLPGVQLGDFLLQFELDEPRESVREIARREL 225
           + +KIN+   + +         LE LP   LG+ ++ F   + R++++E    +L
Sbjct: 430 EDIKINSLRVESLVNEYLKTNRLECLPEDSLGEAVVNFVEKDDRDAIKECVETQL 484


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 149 WTPGSFSNSVSMCCDNFTIFDEYVFIF 69
           W P   S +   C D F+ F E+ F+F
Sbjct: 462 WNPVQESLAFQWCSDFFSNFKEHKFVF 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,931
Number of Sequences: 5004
Number of extensions: 45959
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)