Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C20
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0435 + 10206569-10206730,10207126-10207230,10207897-102079...    29   2.3  
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359...    29   4.1  
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937...    28   5.4  
02_01_0612 - 4573595-4573699,4574153-4574200,4574653-4575693,457...    27   9.4  

>02_02_0435 +
           10206569-10206730,10207126-10207230,10207897-10207986,
           10208256-10208369,10208477-10208530,10208951-10209067,
           10209530-10209639,10209752-10209825,10209921-10209982,
           10210240-10210435,10210506-10210569,10210789-10210832,
           10210974-10211116,10211521-10211751
          Length = 521

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 6   GERINALVTCASSPLPFVSKFKNKHIFVKNGEIITTHAD 122
           G R      C +  L  +   KN H+F+K  +++T  AD
Sbjct: 257 GRRGPVQAACTAKELREILGLKNVHVFIKEADLVTLPAD 295


>11_03_0112 -
           10135052-10135168,10135712-10135795,10135879-10135953,
           10137801-10137978,10138048-10138212,10138291-10138337,
           10140233-10140301,10140531-10140629,10141256-10141375,
           10141459-10141581,10149251-10149364,10150725-10150913,
           10151058-10151110,10151365-10151470,10151957-10152085
          Length = 555

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 506 GGCSSWNLERNGSIINVRWTRFSKAACCSLRRPC 607
           G CS+WNLE N  +++  +      +   LR PC
Sbjct: 70  GTCSAWNLEANYEVVSFIYAFSGINSAEDLRYPC 103


>01_01_1176 -
           9372879-9373097,9373814-9374278,9374372-9375447,
           9375534-9375687,9375783-9375879,9376238-9376374
          Length = 715

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 376 LIKRYYGFKVKHHK--HYDGLTPSKETNVFNENVLTVLPT 489
           L+ +Y+  + K      +D   PSKE+N F ENVL  + T
Sbjct: 229 LLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLKDVET 268


>02_01_0612 -
           4573595-4573699,4574153-4574200,4574653-4575693,
           4576088-4576164,4576265-4576657,4577230-4577382,
           4577938-4578100
          Length = 659

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 617 SGSNMAASRNNTQPLKTSSSEHLLCFHFFPSSKTSTL 507
           +G+ +A +  + QPL++S+ +HL   H   +   STL
Sbjct: 389 NGAPLATANRSLQPLESSNQQHLSRVHSSSADPFSTL 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,788
Number of Sequences: 37544
Number of extensions: 308049
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)