Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C20
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    31   0.69 
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.91 
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    27   8.4  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    27   8.4  

>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 264 LFNSWFDDFWYFSKFSSGNLSDRLTWF 184
           LF  WF  FW FS+FS      +L  F
Sbjct: 838 LFEIWFSQFWKFSEFSVNRFDQKLQEF 864


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 557 RWTRFSKAACCSLRRPCWNRSR 622
           R T F + ACC+ RRP WNR++
Sbjct: 335 RMTEFRRLACCNPRRP-WNRTK 355


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 218 ENFEKYQKSSNQLLKS*KDFLVK 286
           E FE+Y KS+NQ+L +   F++K
Sbjct: 153 ETFERYTKSTNQILDNMHQFMMK 175


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 622 ATPVPTWPPQGTTRSL*KPRPA-NIYYASISFQVP 521
           A P PT+ P  T  ++  PRPA N Y+ S   Q P
Sbjct: 342 ANPYPTYRPLPTRSTVQSPRPAYNPYWQSPVTQAP 376


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 622 ATPVPTWPPQGTTRSL*KPRPA-NIYYASISFQVP 521
           A P PT+ P  T  ++  PRPA N Y+ S   Q P
Sbjct: 342 ANPYPTYRPLPTRSTVQSPRPAYNPYWQSPVTQAP 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,878
Number of Sequences: 27780
Number of extensions: 264014
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)