Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C20
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 571 FKGCVLFLEAAMLE 612
           F GC +FL AAM+E
Sbjct: 298 FLGCTIFLFAAMVE 311


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 526 LGKKWKHNKCSLDEVFKGCVLFLEAAMLEP 615
           LGK+WK N    D V K  +   E    EP
Sbjct: 90  LGKEWKKNLNLRDSVTKYLIHLKEIEDTEP 119


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 79  TYSSKMVKLSQHMLTELEKLPGVQLGDFLLQFELDEPRESVREI 210
           TYS KM+   + ++    K  G++   F     +DE      EI
Sbjct: 594 TYSEKMLGFPERLILPRGKPEGMRYKMFFFLSSMDESNTKSYEI 637


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 79  TYSSKMVKLSQHMLTELEKLPGVQLGDFLLQFELDEPRESVREI 210
           TYS KM+   + ++    K  G++   F     +DE      EI
Sbjct: 594 TYSEKMLGFPERLILPRGKPEGMRYKMFFFLSSMDESNTKSYEI 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,679
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)