Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C19
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...   149   2e-36
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...   147   7e-36
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.    147   7e-36
X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...   144   4e-35
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...   144   4e-35
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...   144   4e-35
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...   144   4e-35
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...   130   8e-31
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    41   7e-04
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    41   7e-04
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC006695-16|AAK71874.1|  364|Caenorhabditis elegans Seven tm rec...    28   5.0  
Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score =  149 bits (361), Expect = 2e-36
 Identities = 69/143 (48%), Positives = 92/143 (64%)
 Frame = +2

Query: 122 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHK 301
           + TE I G I F Q     + + G ++GL  G++GFH+HEKGD   GC+S G H+NP   
Sbjct: 36  IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93

Query: 302 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 481
            HG P+D NRH+GDLGN+    +  + I + D   SLSG + IIGR+VV+HEK DD G+ 
Sbjct: 94  SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153

Query: 482 DHPDSRKTGNAGGRVACGVIGIL 550
               S+ TGNAG R+ACG IGI+
Sbjct: 154 TSDQSKTTGNAGSRLACGTIGIV 176


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score =  147 bits (356), Expect = 7e-36
 Identities = 68/141 (48%), Positives = 90/141 (63%)
 Frame = +2

Query: 122 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHK 301
           + TE I G I F Q     + + G ++GL  G++GFH+HEKGD   GC+S G H+NP   
Sbjct: 36  IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93

Query: 302 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 481
            HG P+D NRH+GDLGN+    +  + I + D   SLSG + IIGR+VV+HEK DD G+ 
Sbjct: 94  SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153

Query: 482 DHPDSRKTGNAGGRVACGVIG 544
               S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score =  147 bits (356), Expect = 7e-36
 Identities = 68/141 (48%), Positives = 90/141 (63%)
 Frame = +2

Query: 122 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHK 301
           + TE I G I F Q     + + G ++GL  G++GFH+HEKGD   GC+S G H+NP   
Sbjct: 36  IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93

Query: 302 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 481
            HG P+D NRH+GDLGN+    +  + I + D   SLSG + IIGR+VV+HEK DD G+ 
Sbjct: 94  SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153

Query: 482 DHPDSRKTGNAGGRVACGVIG 544
               S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174


>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score =  144 bits (350), Expect = 4e-35
 Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 4/152 (2%)
 Frame = +2

Query: 104 SRAIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 280
           +RA+A L  ET+ G I  TQ  +  +  ++G I GL PG +GFHVH+ GD + GC+S G 
Sbjct: 3   NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62

Query: 281 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 460
           HFNP  K HG P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H  
Sbjct: 63  HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122

Query: 461 ADDYGK---SDHPDSRKTGNAGGRVACGVIGI 547
            DD G+       +S+KTGNAG R ACGVI +
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score =  144 bits (350), Expect = 4e-35
 Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 4/152 (2%)
 Frame = +2

Query: 104 SRAIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 280
           +RA+A L  ET+ G I  TQ  +  +  ++G I GL PG +GFHVH+ GD + GC+S G 
Sbjct: 3   NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62

Query: 281 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 460
           HFNP  K HG P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H  
Sbjct: 63  HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122

Query: 461 ADDYGK---SDHPDSRKTGNAGGRVACGVIGI 547
            DD G+       +S+KTGNAG R ACGVI +
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score =  144 bits (350), Expect = 4e-35
 Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 4/152 (2%)
 Frame = +2

Query: 104 SRAIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 280
           +RA+A L  ET+ G I  TQ  +  +  ++G I GL PG +GFHVH+ GD + GC+S G 
Sbjct: 3   NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62

Query: 281 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 460
           HFNP  K HG P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H  
Sbjct: 63  HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122

Query: 461 ADDYGK---SDHPDSRKTGNAGGRVACGVIGI 547
            DD G+       +S+KTGNAG R ACGVI +
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score =  144 bits (350), Expect = 4e-35
 Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 4/152 (2%)
 Frame = +2

Query: 104 SRAIAFLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 280
           +RA+A L  ET+ G I  TQ  +  +  ++G I GL PG +GFHVH+ GD + GC+S G 
Sbjct: 25  NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 84

Query: 281 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 460
           HFNP  K HG P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H  
Sbjct: 85  HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 144

Query: 461 ADDYGK---SDHPDSRKTGNAGGRVACGVIGI 547
            DD G+       +S+KTGNAG R ACGVI +
Sbjct: 145 QDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score =  130 bits (314), Expect = 8e-31
 Identities = 66/151 (43%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
 Frame = +2

Query: 107 RAIAFLSTETIRGNITFTQVQDGK-VHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 283
           RA+A L    + G +  TQ  +G+    +G I GL PG +GFH+H+ GD + GC S G H
Sbjct: 24  RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83

Query: 284 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 463
           FNP   +HG  + V RHVGDLGNV    +  ++I   D  +SL G + +IGR++V+H   
Sbjct: 84  FNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDR 143

Query: 464 DDYGK---SDHPDSRKTGNAGGRVACGVIGI 547
           DD G+       +S KTGNAG R ACGVI +
Sbjct: 144 DDLGQGIDDKAEESLKTGNAGARAACGVIAL 174


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
            T01D3.3b protein.
          Length = 1011

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 83   HHGFTTPSRAIAFLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 256
            H  F   + A+A L T      G  TF+Q+    + + G +  LP G +   +H+ GD S
Sbjct: 875  HDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSS 934

Query: 257  GGCVSTGSHFN 289
             GC   G+ F+
Sbjct: 935  EGCSRVGAPFS 945


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 83  HHGFTTPSRAIAFLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 256
           H  F   + A+A L T      G  TF+Q+    + + G +  LP G +   +H+ GD S
Sbjct: 666 HDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSS 725

Query: 257 GGCVSTGSHFN 289
            GC   G+ F+
Sbjct: 726 EGCSRVGAPFS 736


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 94  HHAVPRHCLSIHRND*RQHHIHSGSRWEGPRSGGHH 201
           HH  P H    H  +   HH H G     P   GHH
Sbjct: 509 HHHAPAH--HGHHGEHGTHHGHHGEHHHAPAHHGHH 542



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
 Frame = +1

Query: 10  DGSQRENKNAASTHIPGCDRSGDGSSWLHHAVPR--HCLSIHRND*RQHHIHSGSRWEGP 183
           DG+  E+K     H         G    HH      H    H  +   HH H G     P
Sbjct: 378 DGAHHEHKEGEH-HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAP 436

Query: 184 RSGGHH 201
              GHH
Sbjct: 437 AHHGHH 442


>AC006695-16|AAK71874.1|  364|Caenorhabditis elegans Seven tm
           receptor protein 206 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 486 WSLLP*SSAFSWSTTALPMIPCGPDSEIWSSTRSILL 376
           W L+P  + F W T AL  I CGP   + +  R+ L+
Sbjct: 137 WMLMPIINGFIWGTVAL--ICCGPKDVLTNYIRNNLM 171


>Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical
           protein F53C11.1 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 98  TPSRAIAFLSTETIRGNITFTQVQDG----KVHVQGGITGLPP 214
           TPS +  F S+ET+R NI    V  G    K+ V+ G  G  P
Sbjct: 370 TPSYSTNFTSSETVRFNINLPDVVIGDPGAKIRVEFGAPGKTP 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,287
Number of Sequences: 27780
Number of extensions: 362810
Number of successful extensions: 963
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)