Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   4.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   9.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   9.5  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 253 YGSFPVNNEYQQPPQSSFYQDSLYNSDSYAENENDVENTASV 378
           Y S+   + +Q P  SSF +    NS S + N N V    S+
Sbjct: 157 YSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNGNHVRFQPSI 198


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 526  LLNQLHRLGIFFLLHF*DDQETS*TDNMTLCSGASWVDIGTSLRNLSQ 383
            +  QL  +  F LL + +DQE       +   G +W  + T L  L +
Sbjct: 921  MFQQLEEIRPFGLLRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLKE 968


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 271 NNEYQQPPQSSFYQDSLYNSDSY---AENENDVENTASVYAGLDYEEKYRCPPNWLRYKE 441
           N    Q  + SF    L  +D +   + N++++   ASV   + Y EK  C P  L+Y E
Sbjct: 139 NVTLSQENKWSFITGYLSRNDKFLKISSNDSELNVKASV---ISYIEKLSCTPLKLKYVE 195

Query: 442 S 444
           S
Sbjct: 196 S 196


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +1

Query: 271 NNEYQ-QPPQSSFY---QDSLYNSDSYAENE-NDVENTASV 378
           N EY   PP  S +   +D  Y+SD Y E E +DV+  + V
Sbjct: 145 NPEYSVSPPNGSKFVKNEDEAYDSDLYVEEEDSDVKGRSMV 185


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 415 PPNWLRYKESCYRFTKSPDRPRNEARKICQAYEADLVAVNSPEEHGFII 561
           P N +++ ++ Y    SP  P   A + CQ +E D  +++  ++HG II
Sbjct: 141 PVNSVQFNDA-YSTHISPKLP-GRAYEDCQKFEIDNPSLSPVDKHGAII 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,945
Number of Sequences: 5004
Number of extensions: 54225
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)