Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C15
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.84 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = -2

Query: 184 YHFQVLGSSPNSQLRVXRNVHFIFLLT----RHNVFILFKTIPMLRLVKLIF 41
           YH  V+G S        +N+H  FL T     H   +  + +     +K+IF
Sbjct: 121 YHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIF 172


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 280 IHYLRENCRKGFGARDDIVYYSGFLPDSSDYRYHFQVLGSSPNSQ 146
           +HY  + C + +  R + +Y      +S    YH Q+ G + N +
Sbjct: 713 LHYETDPCVRYYPRRKEWLYLHRARSESEFEMYHQQLQGVAKNKK 757


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 93 CLYCSKQFQCY 61
          C YC + F CY
Sbjct: 8  CPYCRRNFSCY 18


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 178 NGIYNQNYPEGNQNNTQY 231
           N  Y  NY   N NN  Y
Sbjct: 91  NNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 178 NGIYNQNYPEGNQNNTQY 231
           N  Y  NY   N NN  Y
Sbjct: 91  NNNYKYNYNNNNYNNNNY 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 178 NGIYNQNYPEGNQNNTQY 231
           N  Y  NY   N NN  Y
Sbjct: 326 NNNYKYNYNNNNYNNNNY 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,389
Number of Sequences: 438
Number of extensions: 4520
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)