Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C13
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.58 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.77 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   3.1  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   3.1  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   9.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.5  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +1

Query: 316 KKKKIKVEPESDIELKNNSKHRLSVNQQHLPDDDSTYDESYLNLRVKQEQTFTIPSAQKK 495
           +K+ +++  E  +++  N+   LS  +Q   +  + Y +  LN+R+ +E  FT+ S  KK
Sbjct: 17  EKRTLEIRIEEAVQIYQNA---LSAQKQGDDNAATKYYDELLNVRILRELPFTVNSNYKK 73


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 258 CWLIPRFCLMFTIYKEFFVKFLFIALSIFRVYI*LIYICSFCHFFSIRCI 109
           C L+  F L+F +   F   FLF    IF VY     I  F  FF + C+
Sbjct: 115 CLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFL-CV 163


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 145 NINQSDVDSEYGQSYKKKLHKELFV 219
           N+N ++V+S   Q+YKK+L +++ +
Sbjct: 90  NVNDTEVESMDSQAYKKELIEQIMI 114


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 554 FDSISFSEFTTDSLLWFFFLFFCADGIVNV 465
           FD IS+S+   D  LW  F   C++   N+
Sbjct: 224 FDDISYSKLIADFQLWMTFKAECSEEKFNI 253


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 636 FIIFRICLVTQSTSLKVRFSNNIVIFGV*LNFIFRIYHRLTLVVFLSFFL 487
           F +  I  V  +TSL +  S  I+I  V L+F+  ++H ++ V   S F+
Sbjct: 26  FALCFISFVIGATSLAIGRSPKIIITLVELSFLLSLFHIISGVNHESLFV 75


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 222 IYKEFFVKFLFIALSIFRVYI*LIYICSFCHFFSIRCINRSI 97
           + + F + FLF ALS+FR    +       H   + C+NR I
Sbjct: 3   VLRNFTIFFLFTALSLFRQ---ISASAGDLHPVYVSCVNRCI 41


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 44  FXAKYEWNLLRRIVFCGQMLLLIHLI 121
           +  +Y+W LLR IVF G +  + ++I
Sbjct: 439 YLQRYDWLLLRSIVFFGYLSWIGYVI 464


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 243 RFCLMFTI-YKEFFVKFLFIA--LSIFRVYI*LIYICSFCHFFSIRCINRSI*PQKTILR 73
           RFC    + Y + ++KF  +A    +    + +  I  +CHF  ++ +NR++  +     
Sbjct: 545 RFCFKQLLEYYDIYLKFKLLADWRLLTNPVLQIQEISDYCHFKLLKKVNRNLQIKTNYPT 604

Query: 72  RRFH 61
           + FH
Sbjct: 605 QEFH 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.124    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,266
Number of Sequences: 5004
Number of extensions: 32638
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)