Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_C11
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 33 0.027
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.44
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 29 0.44
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 28 1.0
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 28 1.4
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 1.8
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 1.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 3.1
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 3.1
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 4.1
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 5.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 5.5
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 5.5
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 5.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 5.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 7.2
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 25 9.5
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 33.5 bits (73), Expect = 0.027
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Frame = +1
Query: 349 KPVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLT---SQRRIATPSAKRQNNN--- 510
K +CR T + P A +S Q + T +Q++ ATP ++ N
Sbjct: 51 KEENICRLTPNSAFVPVRDSAVASISTSKVQDFNSYATLTEAQKKTATPVEEKNFLNQIV 110
Query: 511 IQCSKTVGCKLECNTRPGSVSSVKPVNVLWVSATVCD 621
IQC ++ +E NT ++ +V P ++ VS CD
Sbjct: 111 IQCLDSLETDVETNTTHATLLAVDPTWLIRVSQHTCD 147
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.44
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Frame = +1
Query: 280 NARSTKRWKRASPVPLSSSTIKMKPVTLCRSTRTHS-----TSPCTSHAPKPAPSSGQQS 444
++ S+ + A+P SSS + V S+ + S TS S + P+ SS S
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 445 LSPKLTSQRRIATPSAKRQNNNIQCSKTVGCKLECNTRPG-SVSSVKPVNVLWVSATVCD 621
S L+S +T S+ +++I S + +T S SS + S+T+
Sbjct: 250 TSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISS 309
Query: 622 VSFNNS 639
S ++S
Sbjct: 310 SSSSSS 315
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 196 IIFISGRSSALMPLFFIFSALYLFSLIELFVAMIYSLLAYVDMLIMLM 53
++ S ++ FFI A++ F+L +F I+ Y DML+ L+
Sbjct: 215 VVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLV 262
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.0
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Frame = +1
Query: 385 STSPCT-SHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKTVGCKLECNTRP 561
S +P T S+ P P ++ S +P QR + S RQN+ V E N+
Sbjct: 183 SPNPSTPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVSRQNSRTGRGAAVANTEETNSTG 242
Query: 562 G--------SVSSVKPVNVLWVSATVCDVSFNNSQV 645
G S S+ P + W TV D + + Q+
Sbjct: 243 GSETGGAANSSSTSNPSSAKWSRFTVYDDASHTHQL 278
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 415 KPAPSSGQQSLSPKLTSQRRIATPSAKRQNNN 510
+PA S Q SLSPKL+S +T ++NN
Sbjct: 168 QPAALSSQSSLSPKLSSVLPTSTQKRSVRSNN 199
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 277 WNARSTK-RWKRASPVPLSSSTIKMKP-VTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLS 450
+N S K R SP S K +P + L S HS SP S P PS+ S S
Sbjct: 407 FNKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPHSLSP--SQPPVVVPSNTTISSS 464
Query: 451 PKLTS 465
P LTS
Sbjct: 465 PPLTS 469
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 258 NSSNELLERKIYEEMEACQSGAAFLVYNQD 347
NS NELLER + Q F++++QD
Sbjct: 60 NSVNELLERCCQNAKDVTQPAVVFILHDQD 89
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +3
Query: 81 ANNEYIIATNNSINENRYNAEKMKNSGIKALLRPLMKMIKKTTKRVPAKAIDTCHEDAQN 260
A E +ATNN ++E++ + + + N+ + L + +M+ +K+ + ++DT +
Sbjct: 560 AEKEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQ-LKENEQNF--SSLDTSFKKLNE 616
Query: 261 SSNEL 275
S EL
Sbjct: 617 SHQEL 621
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 331 SSTIKMKPVTLCRSTRTHSTSPCTSHA--PKPAPSSGQQSLSPKLTSQRRIAT 483
+S + +PVT+ + + ++ P SHA PK AP +P Q+ + T
Sbjct: 258 ASELHSRPVTVFQEPQRSASQPYESHALSPKVAPLFDNSQATPIPKRQQDVVT 310
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 277 WNARSTKRWKR---ASPVPLSSSTIKMKPVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSL 447
WN R R + SP P+S S ++ H++S +SH + SS +S
Sbjct: 42 WNERRRYRMPKDESISPTPISYSFRSLRRGHTSGHASEHTSSSRSSHDESDSMSSSSESD 101
Query: 448 SPKLTSQ 468
S ++S+
Sbjct: 102 SDSVSSE 108
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 165 KALLRPLMKMIKKTTKRVPAKAIDTCHEDAQNSSNELLERKIYEEMEACQSGAAFLVYNQ 344
+A R L +I+ +V D C + + +E +++ C + + N+
Sbjct: 225 EAYRRYLGLLIESENGKVGNTLSDPCSLRGRTYDIDGIEFAGTGDLKQCLK-LTYNLLNK 283
Query: 345 DETCDLVPVNKDTFYV-PVHFARTE 416
D+ C + P N D + PV FA TE
Sbjct: 284 DKPCSMDPCNFDGISIPPVDFANTE 308
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 373 TRTHSTSPCTSHAPKPAPSSGQ 438
TR H+T+PC K PSSG+
Sbjct: 73 TRRHNTAPCDWVIVKLGPSSGR 94
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 316 PVP-LSSSTIKMKPVTLCRSTRTHSTSPCT----SHAPKPAPSSGQQSLSPKLTS 465
PVP + S + P ++ +T ST P + +H P PAP + Q + L+S
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSS 1547
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 57 NIINMSTYANNEYIIATNNSINE-NRYNAEKMKNSGIKALLRPLMKMIKKTTK 212
NI+ + Y YIIATN+ + + RYN + KN + + + + K +K
Sbjct: 870 NIVKAALYEGTVYIIATNSGLLKLLRYNKD-AKNFNDRFICESVYHLHDKVSK 921
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 367 RSTRTHSTSPCTSHAPKPAPSSGQQSLSP 453
RS T + P + AP PAPS QQ+ P
Sbjct: 18 RSASTAAALPPRTMAPPPAPSRVQQAPPP 46
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 618 TDGCRNPKDIHWFHGRH*SWSRV-AFKLAPN 529
TDG D+ +H + +WS+V F +APN
Sbjct: 261 TDGANFFNDLWCYHPKQSAWSKVETFGVAPN 291
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 491 PSGRTTTSSAPRPLGASLNATRDQDQCLP 577
PS TSS+P PL L + + C+P
Sbjct: 144 PSNPNATSSSPPPLTPILELIKQNNFCIP 172
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 352 PVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKT 528
P T ST T SH P P PS+ +++ K Q +P+ NN+ S T
Sbjct: 321 PNTPFNSTATVDVGAAGSHFPYPQPSN-LDAINAKTYFQSSSNSPAPYVYRNNLPPSAT 378
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 395 GDVECVLVDRHKVTGFILIVDEESGTGLARFHLFV 291
GD V R K T I++ DEE G+AR + V
Sbjct: 74 GDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVV 108
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 636 IIKANITDGC--RNPKDIHWFHGRH*S-WSRVAFK 541
++K N+ + RNPKD+ W + R S W + K
Sbjct: 78 MVKQNLAEWTEKRNPKDVFWVYWRSISEWGNMILK 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,128
Number of Sequences: 5004
Number of extensions: 51152
Number of successful extensions: 254
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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