Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C08
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.05c |cox9||cytochrome c oxidase subunit VIIa|Schizosacc...    26   2.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   3.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   4.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   5.9  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   5.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.8  

>SPCC1259.05c |cox9||cytochrome c oxidase subunit
           VIIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 58

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 224 SIRLAQGLGGLCWWWILYH 280
           S+ +  G  G C+WW  YH
Sbjct: 19  SVTMILGTLGACYWWFGYH 37


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 202 ATNAFQKIDSVSSRAWWIVLVVDS 273
           AT  FQK+    +++W IVLV ++
Sbjct: 98  ATKWFQKVSKNENQSWMIVLVAEA 121


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 168  FRLVCFKQPASPAFCSLRSRIALVSKVLVNIISSNLLASSDKFCRGKTLSQK 13
            F+L+  K P +     L+ R+       +N +SS L+   +  C  KT+SQK
Sbjct: 1114 FKLLSEKHPEAVTTLRLQYRM----NEDINSLSSELIYGGNLVCGSKTISQK 1161


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 221 KSIRLAQGLGGLCWWWI 271
           KS+     +GGLCWW I
Sbjct: 280 KSVFQGYLMGGLCWWII 296


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -3

Query: 371 NQEEFQALHQSMYWDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHG 192
           N+EE + L   +    Y+++        L      TTS I + +  ++SI W ++    G
Sbjct: 387 NEEEAKLL--DLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLG 444

Query: 191 T 189
           T
Sbjct: 445 T 445


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 226 DSVSSRAWWIVLVVD---SVSHCN 288
           +++  RAWW+++V+D   S+S C+
Sbjct: 608 EALCRRAWWVLVVLDRWHSMSTCS 631


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 145 LLETNQTKCRTWSLDVPCTATNAFQKIDSV 234
           LLE NQ++CR   +  P      F  + +V
Sbjct: 611 LLEINQSQCRRLRMPTPILTVEEFNALKNV 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,151
Number of Sequences: 5004
Number of extensions: 44424
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)