Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C03
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8YVZ3 Cluster: Sugar ABC transportor, ATP-binding prot...    34   2.6  
UniRef50_A3ZSE9 Cluster: Putative uncharacterized protein; n=2; ...    34   2.6  
UniRef50_Q830W0 Cluster: FemAB family protein; n=1; Enterococcus...    34   3.4  
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t...    34   3.4  
UniRef50_Q9RQS7 Cluster: Major lipoprotein; n=2; Mycoplasma myco...    33   5.9  

>UniRef50_Q8YVZ3 Cluster: Sugar ABC transportor, ATP-binding
           protein; n=5; Cyanobacteria|Rep: Sugar ABC transportor,
           ATP-binding protein - Anabaena sp. (strain PCC 7120)
          Length = 366

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
 Frame = +1

Query: 190 LDKFKRRMIRSLARSLIHEKKPEDEVWEMMKKETGCGCNMLWQRMRILTLKKLKRLYAAD 369
           L+  KRR     A   I  + P+ E W ++   +GCG + + + +  L       L+  D
Sbjct: 6   LEDIKRRFNNVTAIEEISFEIPDGEFWVLVGP-SGCGKSTILRTIAGLENATSGNLFIGD 64

Query: 370 DKIKNVPTVAR---MTQTDWLLFDLIVVHEKIDFIDKDQMTLPSKDREPLIDL 519
             + N+P  AR   M   ++ L+  + V E I F  K +   P   +E ++D+
Sbjct: 65  RLVNNIPARARDVAMVFQNYALYPHMTVAENIAFGLKMRKINPKIVQERVVDV 117


>UniRef50_A3ZSE9 Cluster: Putative uncharacterized protein; n=2;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 417

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 433 LIVVHEKIDFIDKDQMTL-PSKDR-EPLIDLFALVMQFDIENRSGESLAEAWTAAAVLYN 606
           L+++H  +  + K   +  P +DR EP +D+  +  QF +     +  A+ +  A V YN
Sbjct: 173 LLLLHSIVRALHKRGYSFGPGEDRKEPEVDILGIRFQFGLWEPVNQKKADKYYVAGVTYN 232

Query: 607 SKGHQCSP 630
             G++ SP
Sbjct: 233 RFGYEYSP 240


>UniRef50_Q830W0 Cluster: FemAB family protein; n=1; Enterococcus
           faecalis|Rep: FemAB family protein - Enterococcus
           faecalis (Streptococcus faecalis)
          Length = 401

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 133 NSTRMPPTKNQKDISNVDELDKFKRRMIRSLARSLIHEKKPEDE 264
           +STR    KNQKD+SN+ E    KR  +  L  SL  E K  +E
Sbjct: 245 DSTRQRYDKNQKDLSNLKENQVKKRHNLEELDASLTRELKELEE 288


>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
           transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
           non-LTR retroelement reverse transcriptase - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 1044

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 331 LTLKKLKRLYAADDKIKNVPTVARMTQTDWLLFDLIVVHEKI 456
           L+ KK K ++  D ++KN   V  + Q  W L+D  +V EKI
Sbjct: 68  LSKKKKKGVFRYDRRLKNNDEVTALVQEAWNLYDTDIVEEKI 109


>UniRef50_Q9RQS7 Cluster: Major lipoprotein; n=2; Mycoplasma
           mycoides|Rep: Major lipoprotein - Mycoplasma mycoides
           subsp. mycoides LC
          Length = 526

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 136 STRMPPTKNQKDISNVD--ELDKFKRRMIRSLARSLIHEKKPEDEVWEMMKKE 288
           +  + P  +Q +I+NVD  +LDK K+ +  S    LI+++K     W M+K +
Sbjct: 103 NNNLQPHNDQPEINNVDFSDLDKIKKEL--SFDNYLIYKQKDPISAWSMLKND 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,747,278
Number of Sequences: 1657284
Number of extensions: 10609984
Number of successful extensions: 29178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29169
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)