Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_C03
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 31 0.19
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 29 0.58
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 28 1.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 1.8
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 27 1.8
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.3
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 27 2.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 4.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 4.1
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 9.5
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 285 LLHHFPDFIFWFLLVYQGPSQR 220
+LH+ PD+I FLLV QG S R
Sbjct: 230 ILHYIPDYIGEFLLVQQGKSDR 251
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 169 DISNVDELDKFKRRMIRSLARSLIHEKKPEDEVWEMMKKETGCG 300
D++N+D LDK ++ M++ L + + + +E ++K TGCG
Sbjct: 78 DLANLDGLDKKEQNMLKYLRQ--VRDALYSEEFRSHVQKITGCG 119
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 331 IFSCAARAYYIRNLSPSSSFPRLHLLVSSRVSRTEPTTESS 209
IF C + LSPSSS L L+V+ R TTE++
Sbjct: 170 IFGCLLLGIVVIPLSPSSSSESLKLVVNEEKVRVAFTTEAT 210
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 315 PEHITSATCLLLHHFPDFIFWFLLVYQGPSQRPNHPTFEL 196
P+ T +++ HFPD + F L P P PTF L
Sbjct: 55 PDESTLTDTIVVRHFPDLVMEFFLPEAYPFNSP--PTFFL 92
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 103 LKIFICD**SNSTRMPPTKNQKDISNVDELDKFKRRMIRSLARSLI-HEKKPEDE 264
L+I+I + P + D DEL+ FK+R+I + R I + ++P +E
Sbjct: 237 LEIYIMKKIDQFVNIIPVIGKADTMTSDELNHFKKRVIADMVREKIRYFREPHNE 291
>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 418 WLLFDLIVVHEKIDFIDKDQMTLPSKDREPLIDLFALVMQFD 543
WL +I +H ++ + + +T P E ++D +ALV + D
Sbjct: 56 WLFVLVIYIHVVLNAYNTEVLTKPFSSLECIVDQYALVGEED 97
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 232 SLIHEKKPEDEVWEMMKK--ETG 294
+LI+EK P +E W+ M+K ETG
Sbjct: 137 NLIYEKNPIEETWKAMEKLLETG 159
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 145 MPPTKNQKDISNVDELDKFKRRMIRSLARSLIHEKKPEDEVWEMMKKET 291
M K +K+ + E K K R L + I K+ E+E E KET
Sbjct: 142 MEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKET 190
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = +1
Query: 274 MMKKETGCGCNMLWQRMRILTLKKLKRLYAADDKIKNVPTVARMTQTDWLLFDLIVVHEK 453
+++KE C++L +++ ++K L + K+K V + WL +IV+ E
Sbjct: 877 LVRKEIEEHCSLLGLDAELVSHSRIKGL-SGGQKVKLV-----LAACTWLRPHVIVLDEP 930
Query: 454 IDFIDKDQMTLPSK 495
+++D+D + SK
Sbjct: 931 TNYLDRDSLGALSK 944
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 376 IKNVPTVARMTQTDWLLFDLIVVHEKIDFIDKDQM 480
+ N + + + W LFD+ + +K DKD++
Sbjct: 514 LDNAANYSALNRVTWELFDICIAEKKSFSPDKDEL 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,607
Number of Sequences: 5004
Number of extensions: 45089
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -