Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C03
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027     29   2.4  
12_02_0946 + 24675334-24676338,24676537-24676757,24678253-246783...    29   4.2  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   4.2  
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    29   4.2  
02_01_0413 - 3028946-3031111                                           28   5.6  
09_01_0128 + 1932721-1935181,1936099-1936256                           28   7.4  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    28   7.4  
06_01_0823 + 6216492-6217002,6217140-6218083                           28   7.4  

>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
          Length = 635

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 626 EHW*PFEL*STAAAVQASARLSPDRFSMSNCITSAKRSIRGSRSLL 489
           EH+   +L S  A     ARL+P   ++S C+  A R++  +R LL
Sbjct: 3   EHYDVTQLLSDDALADVLARLAPRWLAVSRCVCKAWRAVVDTRHLL 48


>12_02_0946 +
           24675334-24676338,24676537-24676757,24678253-24678307,
           24678446-24678571
          Length = 468

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 187 ELDKFKRRMIRSLARSLIHEKKPEDEVWEMMKKETGCGCNMLWQ 318
           E+D  KR M RS     IHE++  +   E  ++E G G  MLW+
Sbjct: 344 EIDMVKRAM-RSPVALYIHEEEEGEGEGEGEERECGGGSCMLWK 386


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 316 QRMRILTLKKLKRLYAADDKIKNVPT 393
           QRMR+  L  LK LY  DD + + PT
Sbjct: 821 QRMRLQELPLLKHLYDGDDIVLSAPT 846


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 274 MMKKETGCGCNMLWQRMRILTLKKLKRLYAADDK 375
           +++K+ G GC    ++MR+L  K  KRL   D +
Sbjct: 453 LVQKKFGPGCRQAEEKMRLLLAKNSKRLKLLDQR 486


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 160 NQKDISNVDELDKFKRRM-IRSLARSLIHEKKPEDEVWEMMKKETGCGCN 306
           N K+I+N   + K  R + +  L  + +HE  PEDE  +  K   G G N
Sbjct: 410 NFKNITNTLHILKNLRNLTVLLLGGNFMHEAMPEDETIDGFKNIQGLGIN 459


>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 193 DKFKRRMIRSLARSLIHEKKPEDEVWEMMKKE 288
           DK KR++ R    S++     E+EVWEM+ +E
Sbjct: 200 DKIKRKVSRKFRNSIV-----EEEVWEMIHEE 226


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 133 NSTRMPPTKNQKDISNVDELDKFKRRMIRSL 225
           +ST+  P  NQ+D S+ ++LD+  + ++R L
Sbjct: 663 DSTKFYPRFNQEDTSSFNDLDEHSKNILRRL 693


>06_01_0823 + 6216492-6217002,6217140-6218083
          Length = 484

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 543 HRKSIRRESGGGLDRGRRALQLERSP 620
           H + +RR  GGG  RGR   + E  P
Sbjct: 48  HERLLRRRGGGGALRGREGFRFEAVP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,055
Number of Sequences: 37544
Number of extensions: 302189
Number of successful extensions: 883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)