Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    30   0.34 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.1  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   4.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   7.2  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.2  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.5  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +1

Query: 181 NFQYLMDPNSYKYLWLCLL----FSCQVILCKEISTP 279
           +F+YL DP++Y +L LC++     + +   CK ++ P
Sbjct: 382 SFEYLGDPSTYNHLKLCVILLKRLTAEKYFCKRLNKP 418


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 508 LADVAENVLENWYYSEDHDTVNLYTWL 588
           L D  E VLEN  Y  + +TV+LY  L
Sbjct: 730 LKDTFETVLENLPYFTNSETVDLYNLL 756


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 357 KPVIEGVCQNFTLLTLIQYINIFIG*WCTNFLTQYYLTT 241
           K VI+     FT    +  I  F G WC+  + Q+YL T
Sbjct: 488 KLVIKSYATAFTWTFALVAIIAFAGFWCSLRIKQFYLHT 526


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 427  ARSEVRLVEIQEGLCSELKANKDQCYSLADVAENVLENWYYSEDHDTV 570
            A  E  + ++Q+GLC +  +NK  C   +      L N  Y  D  T+
Sbjct: 1298 ATMENLISQLQKGLCDDSLSNKTDCTESSKQTIETLMN--YENDKQTL 1343


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 274 TPSTDKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEEAKLKTYARSEV 441
           TPST  +    N  +   V +D FN    K  R  Y G D  WE   +   A +++
Sbjct: 223 TPSTAYHRTGYNGRKYNLVFSDEFN----KEGRSFYSGNDQFWEAVNIHYAATNDL 274


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +1

Query: 472 SELKANKDQCYSLADVAENVLENWYYSEDHDTVNLYTWLCIQKLQNCCPL 621
           +E+   +D      D+  ++ ++  +S  HD       +C+  L +CC L
Sbjct: 254 AEILVLRDLTSRFIDMIHDICDSVLFSRIHDIRASIRIVCVTALYDCCQL 303


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 616 DSSFVISEYTAMYTN*QYHDLHCNTSFLIHFQLHL 512
           D+ F +SE     T     D+H   SF ++  LH+
Sbjct: 617 DTGFSLSESVPFATKEWIQDMHAENSFNMYKNLHI 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,122
Number of Sequences: 5004
Number of extensions: 52222
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)