Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_C02
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27394| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 33 0.27
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_16063| Best HMM Match : Apo-VLDL-II (HMM E-Value=6.1) 30 1.4
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 29 3.3
SB_33356| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 28 5.8
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12) 28 7.6
SB_38927| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_45583| Best HMM Match : RVT_1 (HMM E-Value=1.4e-05) 28 7.6
SB_42130| Best HMM Match : rve (HMM E-Value=5.9e-13) 28 7.6
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.6
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 7.6
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12) 28 7.6
SB_4914| Best HMM Match : RVT_1 (HMM E-Value=2.5e-16) 28 7.6
>SB_27394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.022
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 496 QCYSLADVAENVLENWYYSEDHDTVNLYTWLCIQKL 603
QC + ++ E V+E WY+ +H +L TWLC +++
Sbjct: 17 QCVHMLELFEEVIEEWYF--EHQDQDLMTWLCRERV 50
>SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 472 SELKANKDQCYSLADVAENVLENWYYSEDHDTVNLYTWLCIQKLQN 609
+E+ K++C + + E+ + WY++ H NL WLCI+++ N
Sbjct: 98 AEVTRLKNRCEYMVEQHEDDITEWYWN--HPDENLTQWLCIERVLN 141
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 262 KEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEEAKLKTYARSEV 441
KE++ + D NVLN+ +Q L+D+ +Y K+ R K + + K++ +S
Sbjct: 456 KELNNRNYDALENVLNDIEQKSSLSDAIDYLRKEIRRIKDDSNEFVERNPKIEIQDKSN- 514
Query: 442 RLVEIQEGLCSELKANKDQCYS 507
++ L +E+K K+ S
Sbjct: 515 ESKDLTSNLLNEVKTCKEMLES 536
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 262 KEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEEAKLKTYARSEV 441
KE++ + D NVLN+ +Q L+D+ +Y K+ R K + + K++ +S
Sbjct: 434 KELNNRNYDALENVLNDIEQKSSLSDAIDYLRKEIRRIKDDSNEFVERNPKIEIQDKSN- 492
Query: 442 RLVEIQEGLCSELKANKDQCYS 507
++ L +E+K K+ S
Sbjct: 493 ESKDLTSNLLNEVKTCKEMLES 514
>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 990
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 337 DSFNYWFKKTSRGKYEGGDVAWEEAKLKTYAR-SEVRLVEIQEGLCSELKAN 489
D + Y KTS+ KY D W + KL++ EV+ V+I+ LC LK N
Sbjct: 199 DGYGYNSLKTSQLKYVVFDWTWRDQKLRSLMDIPEVKAVKIERVLC--LKTN 248
>SB_16063| Best HMM Match : Apo-VLDL-II (HMM E-Value=6.1)
Length = 108
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 319 QCKVLTDSFNYWFKKTSRGKYEGGDVAW-EEAKLKTYARSEVRLVEIQEGLCSE 477
+C V +S W K +S + GD W E K+ + +++++ LC++
Sbjct: 56 RCNVCHESVRRWLKDSSSSRIVSGDRVWLEPNKINMFVNE--KIIDLNSNLCTK 107
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +1
Query: 286 DKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEEAKLKTYARSEVRLVEIQEG 465
+ +++LN+C+ ++ D+ K + EG + ++E+ TY RS +L +
Sbjct: 116 EDRLHILNDCEYFRIYIDNLMKQSKHAIKLFKEGKERMFDES--STYRRSLTKLSLVFSH 173
Query: 466 LCSELKA 486
+ +ELKA
Sbjct: 174 MLAELKA 180
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +1
Query: 280 STDKNINVLNECQQCKVLTDSFNYWFKKTS-RGKYEGGDVAWEEAK--LKTYARSEVRLV 450
+TD + + E +Q K + F Y+ S K DV +E K L+T ++ LV
Sbjct: 655 NTDSLLKTVEELKQDK--EEDFKYFEDLRSLEEKIRLKDVVIDELKTSLETCSKERDELV 712
Query: 451 EIQEGLCSELKANKDQCYSLADVAENV 531
E L SELKA K + L E++
Sbjct: 713 ESNRNLGSELKALKKENEELVSQVESL 739
>SB_33356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 LCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEE-AKLKTYAR 432
+ E+S PS+ KN N + V DS KT KYE A ++ LKT R
Sbjct: 13 MSSEVSEPSSGKNANSPLDVLSDPVSEDSVIPTNSKTRYQKYEMDKKAEKKPGFLKTSTR 72
Query: 433 SEVRLVEIQEGLCSELKANKDQ 498
VE+ + + L N+ +
Sbjct: 73 RNKNRVEMNDNVAITLAVNEQR 94
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 280 STDKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEEAKLKTYARSEVR 444
S+D N C C+VL + K+ + + E G E +L+ R R
Sbjct: 323 SSDPATEATNACSDCEVLRERLKTSMKELEQARAENGSFKEERDRLRQRVRPHPR 377
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 371 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 411
>SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)
Length = 651
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 247 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 287
>SB_38927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 50 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 90
>SB_45583| Best HMM Match : RVT_1 (HMM E-Value=1.4e-05)
Length = 182
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 50 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 90
>SB_42130| Best HMM Match : rve (HMM E-Value=5.9e-13)
Length = 975
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 484 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 524
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 CQVILCKEISTPSTDKNINVLNECQQCK-VLTDSFN 348
C V+LCK + P +K +N C CK D +N
Sbjct: 131 CDVMLCKTATCPGYEKASCRVNPCGACKPEFLDQYN 166
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 1152 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 1192
>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
Length = 1358
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 592 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 632
>SB_4914| Best HMM Match : RVT_1 (HMM E-Value=2.5e-16)
Length = 548
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QVILCKEISTPSTDKNINVLNECQQCKVLTDSFNYWFKKTS 369
+ I+ ++ PS +K + LN C V+ S YW KK S
Sbjct: 82 EAIVREDYKPPSIEKISSTLNGCTVFTVVDMSSCYWHKKLS 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,135,252
Number of Sequences: 59808
Number of extensions: 344126
Number of successful extensions: 863
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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