Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_C02
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.28 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.9  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 217 YLWLCLLFSCQVILCKEISTPSTDKNINVLNE 312
           ++  CL  +CQ  + +E S  + +K++NV++E
Sbjct: 6   FMVACLGIACQGAIVRENSPRNLEKSLNVIHE 37


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 526 NVLENWYYSEDHDTVNLYTWLCIQK 600
           NV++ W  +ED++++N    L  Q+
Sbjct: 276 NVIDKWIKTEDNESLNAARMLIRQE 300


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 ISTPSTDKNINVLNECQQCKVLTDSFNYWF 357
           +++  + +N N   EC+  KV   + + WF
Sbjct: 259 VASLRSSENQNTSAECKLAKVALMTISLWF 288


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 ISTPSTDKNINVLNECQQCKVLTDSFNYWF 357
           +++  + +N N   EC+  KV   + + WF
Sbjct: 9   VASLRSSENQNTSAECKLAKVALMTISLWF 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,172
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)