Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_C01
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 138 6e-34
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 136 3e-33
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.58
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.77
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 28 1.0
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 27 2.3
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.4
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 7.2
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.5
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 9.5
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 138 bits (334), Expect = 6e-34
Identities = 66/130 (50%), Positives = 95/130 (73%)
Frame = +1
Query: 193 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 372
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 373 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 552
+V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 553 TRDVTNSELR 582
++ +R
Sbjct: 173 QNQTSSCSMR 182
Score = 61.3 bits (142), Expect = 1e-10
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 87 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 221
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G +N ++G+
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 136 bits (329), Expect = 3e-33
Identities = 65/130 (50%), Positives = 92/130 (70%)
Frame = +1
Query: 193 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 372
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 373 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 552
+V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 553 TRDVTNSELR 582
++
Sbjct: 173 QNQANGCSMK 182
Score = 62.9 bits (146), Expect = 4e-11
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +3
Query: 87 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 221
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G +N ++G+
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.1 bits (62), Expect = 0.58
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +1
Query: 187 VTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 366
+TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 90 LTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK- 144
Query: 367 RWMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 492
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 --FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 0.77
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 223 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 396
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 397 IEANIDVKTT 426
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 284 LRKDLSASVSACRSARETSKTLPFNPSEAIFVTLGTVDKRGADLPLAEHRRSLDIVP-IF 108
+ KD S + +A SA E +P +FV GTV +DLP+ R L ++ F
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPILLPRMVLRVLKGKF 390
Query: 107 ASEWVDNLLLNT 72
++ + L +NT
Sbjct: 391 EADPYEALRINT 402
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 108 KDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSFR 230
++WY ++S + +L+ R +G N GRI G +FR
Sbjct: 290 QEWYSFFPRYVYSTNCMNDSLLTRLEGIGNAIGRI-GNAFR 329
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 390 LPFFNHPPELIGCEVHAVEVAEHITS 313
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 450 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 542
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 367 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 504
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 457 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRGGGEQVD 603
G T +DS+ ++ A H + R +++K E ++ D +N ++ + D
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKDSPDSND 54
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 346 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 444
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 369 PELIGCEVHAVEVAEHITSL 310
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 476 P*ANARRATPSTLRSEQSERKCVKSLHATSLTLNSGEVVNKL 601
P R A+P TL+S + + K K+ E+ NKL
Sbjct: 382 PQKGVRPASPHTLKSVKDDLKRTKTYTKAEFAAKREEIFNKL 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,588
Number of Sequences: 5004
Number of extensions: 55924
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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