Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_B20
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1346 + 32798825-32798900,32799027-32799070,32799163-327992...    29   4.3  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    28   7.5  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    28   7.5  
01_01_0870 - 6789903-6792251                                           28   7.5  
04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665...    27   9.9  

>04_04_1346 +
           32798825-32798900,32799027-32799070,32799163-32799256,
           32799914-32799981,32800105-32800275
          Length = 150

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 251 SELVEVLIGEVH-VRIRVYFSPDANYQDDQSRNGKQEIEAKHEVLYTGHSTFEGHCYSIK 75
           S L+ +L    H +R+        N + +  R+ K E       L   H T +GHC S K
Sbjct: 14  SLLLLLLATRAHGIRLDRQLHEAINNKQEIMRDSKAEQSLNTARLMNKHCTSDGHCNSGK 73

Query: 74  YYRQIVLLXE*NDSHQRQQS 15
             R +V       + Q+QQ+
Sbjct: 74  VQRPVVQAEAGAAAKQQQQN 93


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 644 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVC 513
           G V  AG D A   LLGG + A+  + + GP  R ++ + L+ C
Sbjct: 277 GMVDNAGNDSAKCVLLGGLSEAKKLELIAGPEMR-IFRSDLRWC 319


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 506 DINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEEY*KRYYH 336
           D N L D+ +  +LSNG    AH  I  VR   +   A S  S     +E+ + +YH
Sbjct: 614 DDNELADLEL--LLSNGESLKAHTAIISVRCPKLLPSAKSLGSDGKITDEWGRSFYH 668


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -2

Query: 644 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVCLYDINSLLDVLVYRIL 465
           G + G+    AV +L G     +  +T +  VG   +T  +++  + +N    +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 464 SNGSVQVAH 438
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


>04_03_1044 -
           21965237-21965341,21966130-21966300,21966414-21966564,
           21968768-21969348
          Length = 335

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 387 AVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCG 533
           AV +AG +  T L   V R  + +++ Y V+  V+ +ID+    +   G
Sbjct: 174 AVLLAGMVNVTTLSSKVYRQRDGTVSLYGVNSLVEASIDVSNCQMSPSG 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,781
Number of Sequences: 37544
Number of extensions: 371356
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)