Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_B16
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 32 0.059
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.31
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 29 0.73
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.96
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 28 1.3
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 27 2.9
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 27 2.9
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |... 26 3.9
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 3.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.1
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 26 5.1
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 25 6.8
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 9.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 9.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 9.0
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 32.3 bits (70), Expect = 0.059
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 490 IVHDVFTFCIFDFLYFILTYSYISF--CC*FLIVSLYIPV 377
I H +F F +F F YF+L + I F C + +S Y P+
Sbjct: 7 IKHSIFQFFVFPFYYFLLIITEIGFSSCIQYSGLSAYFPI 46
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.31
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 344 SLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVK----DAEGKDVMNDTNLE 502
S + + I K++ + +K TE+ +A SKNE+E ++ DA+GK +++ E
Sbjct: 1473 SASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEKE 1529
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 521 LPQNVKPENYYLNITPFFLENNFTFQGEVTILL 619
LP+NVKP +Y L++ P FT+ G+V + L
Sbjct: 20 LPKNVKPIHYDLSLYPDL--ETFTYGGKVVVTL 50
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 0.96
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 377 DRNIEANDKKSATERNIAISKNEIEKVKDAEGK 475
+ N++ + + +ATE + + K ++EK+K +EGK
Sbjct: 725 EANVDTSKQTNATEPEV-VDKTKVEKLKASEGK 756
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/99 (20%), Positives = 46/99 (46%)
Frame = -2
Query: 375 LGISLLVSLRDSLASATLQSSYFVTLAS*SVLGQAAKLYTKSDDVTKVSTNITNINRTNG 196
LG S+ +SLR +LA L +S + + S+ + L + +TK+ ++
Sbjct: 176 LGTSISMSLRPNLARPLLTASSVKSQSVRSLREVGSNLPIPTGSLTKIDGLNNQLSNDLT 235
Query: 195 FDRMIPLSVFVVPSTTFNGSCVCIDKSPLARPSCDVWSI 79
+ + F +++F + ++++ + +C VWS+
Sbjct: 236 RSQTTNIFGFAEKASSFAAAVHKLNEARIRNQACHVWSL 274
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 447 ISFLLIAIFLSVA-DFLSLASIFLSLGISLLVSLRDSLASATLQSSYFVTLAS*SVLG 277
ISF+L+A + DF L+L + + L +LA T Q F+TL S +V+G
Sbjct: 392 ISFILVAFGAPLLHDFHLTYFCALTLSVFTVYPLASTLAFNTEQWQRFLTLKSFNVIG 449
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 46 TDRGGNPCEXWQ 11
TD GNPCE WQ
Sbjct: 256 TDTQGNPCEWWQ 267
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 419 RNIAISKNEIEKVKDAEGKDVMNDTNLETPKEFRLPQNVKPENYYLNITPF 571
RN S + +E V E D+ +++ + + RL N E YL++ PF
Sbjct: 412 RNHLTSLSGLENVPSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSLNPF 462
>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 379 VFRYIFISFIKGQFSFRNSTEFVFCDISQLISFRAGSEIVHQ 254
V R + + +I GQ+ + TEF+ C + +L+ EI+ Q
Sbjct: 52 VDRAVRLEYIGGQYGNQRPTEFI-CLLYKLLQIAPEKEIIQQ 92
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.2 bits (55), Expect = 3.9
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Frame = +2
Query: 287 DQLANVTKYELCRVAEAKLSLNETNKDIPK---------DRNIEANDKKSATERNIAISK 439
D++ N K +L R E ++SL + + +R DK+ + R A K
Sbjct: 421 DEMENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLK 480
Query: 440 NEIEKVKD--AEGKDVMNDT-NLETPKEFR----LPQNVKPENYYLNITPFF-LENNFTF 595
+ IE VKD + + + T + T R + + +K E YY + F ++N F
Sbjct: 481 SSIENVKDDLSRSEKALGTTMDRNTSNGIRAVKDIAERLKLEGYYGPLCELFKVDNRFKV 540
Query: 596 QGEVT 610
E T
Sbjct: 541 AVEAT 545
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 496 ICIVHDVFTFCIFDFL 449
ICIV D+F + +FDFL
Sbjct: 437 ICIVTDLFGWSVFDFL 452
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 272 ACPKTDQLANVTKYELCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERNIAISKNEIE 451
A + DQL V + K+SL TN DI + ++ K+ A +R + NE++
Sbjct: 440 ATKRCDQLNREIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNLL--NELD 497
Query: 452 KVK 460
+K
Sbjct: 498 ALK 500
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +2
Query: 275 CPKTDQLANVTKYELCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEK 454
C + D+L N ++ R +A + P D + KS E N+A+ ++ K
Sbjct: 53 CVRGDELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVK 112
Query: 455 V 457
+
Sbjct: 113 I 113
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +2
Query: 317 LCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERN 424
+ R+ + N+T+ + +D + E +D+KS+ ++N
Sbjct: 348 ILRIGYRAFTTNDTHDERSEDEDEEVSDEKSSAKKN 383
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 344 SLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVKDAEGKDVMND 490
SLNE ++ +D N ND++ A + I + + ++ E +D D
Sbjct: 57 SLNEMEVEM-EDENENENDEQEAIQYYINVESQDADETLHQEAQDSSED 104
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 353 ETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVKDAEGKD 478
ET+ + +IEANDK T+ SK +KV++ E K+
Sbjct: 455 ETDVKAKETDSIEANDKDEKTD-----SKETEDKVEETESKE 491
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 9.0
Identities = 33/125 (26%), Positives = 56/125 (44%)
Frame = -2
Query: 516 NSLGVSKFVSFMTSLPSASLTFSISFLLIAIFLSVADFLSLASIFLSLGISLLVSLRDSL 337
+S ++ + TS P S T S I + ++AS + L S ++ L
Sbjct: 3416 SSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSI-LNSSTPITSSSVL 3474
Query: 336 ASATLQSSYFVTLAS*SVLGQAAKLYTKSDDVTKVSTNITNINRTNGFDRMIPLSVFVVP 157
S+T SS V +S V+G ++ L S V+ VS N + ++ + GF S F
Sbjct: 3475 NSSTPISSSTVITSS-VVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSS----SAFSTG 3529
Query: 156 STTFN 142
S++F+
Sbjct: 3530 SSSFS 3534
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 329 AEAKLSLNETNKDI-PKDRNIEANDK----KSATERNIAISKNEIEKVKDAEGKDV 481
A+ K++ N+ + DI P++ + ND KSA N+ + KDA KD+
Sbjct: 121 AQNKIATNKESTDILPEEVQLVLNDLNDDVKSANSANLQPITTNVVNEKDAYRKDI 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,333
Number of Sequences: 5004
Number of extensions: 45655
Number of successful extensions: 168
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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