Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_B15
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 138 6e-34
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 47 2e-06
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 46 6e-06
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 31 0.19
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 30 0.25
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.77
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 28 1.3
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 2.3
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.1
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 26 5.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 7.2
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 25 7.2
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.2
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 25 9.5
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 25 9.5
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 25 9.5
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 9.5
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 138 bits (334), Expect = 6e-34
Identities = 62/134 (46%), Positives = 91/134 (67%)
Frame = +2
Query: 143 YKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIRENLEHYIP 322
Y+IP IENLG D D IDF+DNDIR L FP +KRL+ +L NNRI I ++ +P
Sbjct: 28 YQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLP 87
Query: 323 NLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFR 502
NL+++ L N++ E+ DLDPL++ P+L LS + NPVA K +YR Y+ +++P L +LDF
Sbjct: 88 NLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFE 147
Query: 503 KIKQKERDEANTLF 544
++++ ER A +F
Sbjct: 148 RVRRNERLRAEEVF 161
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 47.2 bits (107), Expect = 2e-06
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = +2
Query: 146 KIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIRENLEHYIPN 325
+I Q ENL + S N + G +L+ L+ + ++NN I + + + N
Sbjct: 203 RITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHL--SYLAGLKN 260
Query: 326 LESVILTNNNISELGDL-DPLSTLPKLRTLSLMHNPVANKNH--YRAYVAFKMPELRLLD 496
L + +NN +S ++ D LS L KL T+ NP+ N YR V +P+LR +D
Sbjct: 261 LVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLPQLRQID 320
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 45.6 bits (103), Expect = 6e-06
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +2
Query: 272 NNNRIVRIRENLEHYIPNLESVILTNNNISELGDLDPLS---TLPKLRTLSLMHNPV--- 433
NN + V L P L ++ L NN I+ L DLDP S LP+L+ L L+ NP+
Sbjct: 224 NNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPIVTT 283
Query: 434 -ANK-NHYRAYVAFKMPELRLLDFRKIKQK 517
AN+ Y+ + + P+LRLLD I +
Sbjct: 284 FANRAMDYQREMVSRFPKLRLLDGNSINSE 313
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 293 IRENLEHYIPNLESVILTNNN----ISELGDLDPLSTLPKLRTLSLMHNPVANKNHYR 454
++EN + + PN+E+ + + N+ +S+ G LD L++ L + N + + YR
Sbjct: 74 LQENFDSFFPNVEAYVESGNSNGDLMSDNGKLDDLNSRAAYSALKALQNSYGSSHLYR 131
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/89 (21%), Positives = 46/89 (51%)
Frame = +2
Query: 146 KIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIRENLEHYIPN 325
+I ++ + L + + + +N+I +++ L+ L + L+NN++ ++ + + +
Sbjct: 723 RIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKAS--QPMIH 780
Query: 326 LESVILTNNNISELGDLDPLSTLPKLRTL 412
L + ++NN I +L + P LRTL
Sbjct: 781 LRILRISNNAIHQL----EVDQFPHLRTL 805
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.7 bits (61), Expect = 0.77
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 272 NNNRIVRIRENLEHYIPNLE-SVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNH 448
NN + I E +I N S T++N+S G L P T R L+ + NP N++H
Sbjct: 511 NNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDH 570
Query: 449 YR 454
+
Sbjct: 571 VK 572
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 143 YKIPQIENLGATLDQFDT-IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIRENLEHYI 319
+K+P I + G+ T ++ +D D R + LL + + + E
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKPD 300
Query: 320 PNLESVILTNNNISELGDLDPLSTLPKLR 406
P S++ + E GD+D LS LP+ R
Sbjct: 301 PRKASLLPLSEEEFEKGDVDELSALPEFR 329
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 182 DQFDTIDFSDNDIRK--LDGFPLLKRLKCILLNNNRIVRIRE 301
DQ I +S ++ + ++GFPL+KR LN +I++I E
Sbjct: 4 DQIHKITYSGVEVFEYTINGFPLMKRCHDNWLNATQILKIAE 45
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 410 LSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANTLFKSRKGKEIQREIAKK 589
+S+ + +N YR + P RL I + + D + T+F+ + + I +
Sbjct: 1 MSISIETITKRNQYRVDQPQRQPS-RLSTVASISEYQSDYSKTVFEEIELEVIPNKQNIS 59
Query: 590 AKTFVPGGNMPDPK 631
++F GN DP+
Sbjct: 60 TRSFRNDGNDSDPQ 73
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 275 NNRIVRIRENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNHY 451
N+ I+ I+ + IP E+++ N G + + PKLR ++ +P N N Y
Sbjct: 147 NSVILAIQTLINKGIPE-ENIVFVNLIACNEGITNVFAKFPKLRMVTASIDPELNANKY 204
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +2
Query: 395 PKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIK--QKERDEANTLFKSRKGKEI 568
PKLR + R Y P++ +D IK ++ER + K + +
Sbjct: 321 PKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRL 380
Query: 569 QREIAKKAK 595
Q E KK K
Sbjct: 381 QEEERKKKK 389
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 122 GPXQGFIYCIEFCMSSV 72
GP G IYC EF M ++
Sbjct: 70 GPNGGLIYCFEFLMENL 86
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 260 CILLNNNRIVRIRENLEHYIPN 325
CI+LN IV + L+H PN
Sbjct: 112 CIVLNTTGIVGAEKELQHAFPN 133
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 326 NLVYNVPNSLVSSRSCYYSIEYISTFLAVENRQAF 222
+L YN+P+ L+ SC I+ I+ L +++ Q+F
Sbjct: 744 HLGYNIPSQLMELASCLQRIQLIAMCL-IDSVQSF 777
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 413 SLMHNPVANKNHYRAYVAFKMPELRLLDFRKI 508
S + + N+ ++R AFKMP+ + RK+
Sbjct: 127 SEIRETIKNEKYFRVLDAFKMPKFKYDSSRKV 158
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 220 DVVVREVYRIKLIERSTQIFDLWNLITSKIQFSVP 116
++ +VYRIK ++R DL N +T F VP
Sbjct: 97 NIQTEKVYRIKPVQRVLSPSDLTNELTILDLFHVP 131
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +2
Query: 365 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANTLF 544
L D D L ++ + + + P V +++PE+ +K +++++D+
Sbjct: 21 LDDFDGFMGLEEIEGVDIKYQPKGAMKE----VIYELPEVHEKKDKKPEKRKKDQKEASE 76
Query: 545 KSRKGK 562
K +KGK
Sbjct: 77 KKKKGK 82
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 164 NLGATLDQFDTIDFSDNDIRKLDG 235
N GA Q +TID D ++ +DG
Sbjct: 32 NFGAKAPQVNTIDEGDENLEAIDG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,785
Number of Sequences: 5004
Number of extensions: 53689
Number of successful extensions: 180
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -