Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_B12
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    27   2.3  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    27   3.0  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   4.0  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.2  

>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 110 YKIAANILKKVSTEGGSVKTLLYDDK 187
           Y  AANIL  +S + GS+K L ++ K
Sbjct: 4   YNHAANILSDLSKKKGSIKQLAFNSK 29


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 166 DFVIRR*TPSLH*LRMADGDEGPLIPIQTKLAVIVLAKLFVYSVAMFTLPFVAFFGVHYL 345
           D  I   +P  H +R+ D     L+PI  KL + V   L  +S+    +P +      ++
Sbjct: 189 DIAIEAYSPLTHGIRLNDEK---LVPIAKKLNISVAQLLIRWSLQKGYIPIIKSTKKEHM 245

Query: 346 LSDYYHLETFVVTV 387
           LSD   L+ F  T+
Sbjct: 246 LSD---LDVFNFTI 256


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 550 VSSLRSFFRTLLDWECMNADQSRFHVHHILSHDKPD 443
           V S++ FF   LD+  +N D + F++ HI+  D PD
Sbjct: 117 VKSIQEFF---LDYLVVNNDLASFNIPHII-EDSPD 148


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 278 NYLSIVWLCSHYHLLHFLVF-TTYSLIITIWKH 373
           N + I  L + Y    F+   TTY LII IWK+
Sbjct: 271 NAIQITTLHARYIFASFISRDTTYQLIIAIWKN 303


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 454 HEKEYDEHGNEIDQHSYTPSQVESEKSSLNLKQD 555
           +EKE ++H N +   +Y P  + ++K    L ++
Sbjct: 304 YEKELNDHVNIVKSSTYIPISIPTQKQKPTLPKN 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,049
Number of Sequences: 5004
Number of extensions: 43339
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)