Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_B03
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 184 7e-48
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 184 7e-48
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.42
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.56
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 3.0
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 26 3.9
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 3.9
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.2
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.1
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 9.1
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 184 bits (449), Expect = 7e-48
Identities = 81/144 (56%), Positives = 107/144 (74%)
Frame = +3
Query: 81 MRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGR 260
++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK A+R GR
Sbjct: 15 LKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGR 74
Query: 261 HCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKN 440
H G+GKR+GTA ARMP +W + KID+HLYH+LY++AKGN FK+
Sbjct: 75 HTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKH 134
Query: 441 KRVLMEYIHRKKAEKARTKMLSDQ 512
KR L+E+I R KAE RTK++ +Q
Sbjct: 135 KRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 184 bits (449), Expect = 7e-48
Identities = 81/144 (56%), Positives = 107/144 (74%)
Frame = +3
Query: 81 MRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGR 260
++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK A+R GR
Sbjct: 15 LKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGR 74
Query: 261 HCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKN 440
H G+GKR+GTA ARMP +W + KID+HLYH+LY++AKGN FK+
Sbjct: 75 HTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKH 134
Query: 441 KRVLMEYIHRKKAEKARTKMLSDQ 512
KR L+E+I R KAE RTK++ +Q
Sbjct: 135 KRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.42
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 241 SVFLRTRAREWTATGFLMTRPSLIILRMFC 152
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 182 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 93
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -2
Query: 587 FLLLGGNT-----FLAALACLLYFIAAGL 516
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 94 LPHRIXRGCKPLLQLEGTHPD 32
+P + + CKPL G HPD
Sbjct: 233 MPSSVCQNCKPLPDFGGGHPD 253
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 318 VPSVAYAHWQYLFSYQS 268
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 478 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 386
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +3
Query: 99 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 245
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 246 RRKGR 260
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 153 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 269
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 632 SGKXGFVFSSEGLQQFLLLGGNTFLAA 552
S G VFS + L +F+ GGN F+ A
Sbjct: 79 SKSLGPVFSPKSLLEFVQSGGNLFVVA 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,084
Number of Sequences: 5004
Number of extensions: 52413
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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