Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A24
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    27   3.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   4.1  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   5.5  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 205 VIGKGIDVDLEVVLTHRIVNEGGQDQEVVI--GARNLQRGSAVVAEIVTLNETEAENGIA 378
           VIGKG+ V   +++ + +V +G + +  ++  GA+   +      EI   +  EA   IA
Sbjct: 394 VIGKGVVVSNSILMDNIVVEDGVRLESCIVASGAQIGAKSKLRECEIGVDHRVEA-GRIA 452

Query: 379 VGKEIVVVSEIGTE 420
            G+ +V + +I T+
Sbjct: 453 RGERLVDMEKIETD 466


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 205 VIGKGIDVDLEVVLTHRIVNEGGQDQEVVIGARNLQRGS 321
           VIG   +V+  +VLT    N  G D + +I  R    GS
Sbjct: 116 VIGSSEEVNSNLVLTDLETNTDGYDPKFLISVRKFLMGS 154


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 647 TFTFSPPSLYAFTTFLHFS-FQAVLLFFLVNRARVIFRRI 531
           T   + PS YAF++ +HF   Q+ +LF      R+  +RI
Sbjct: 36  TIRLTSPSAYAFSS-IHFEILQSTILFLSRESVRLAMQRI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,186
Number of Sequences: 5004
Number of extensions: 35509
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)