Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A24
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 333 CYDCASSLKISSPDHDFL 280
           CY C S   I  PDH  L
Sbjct: 323 CYYCISGAPIERPDHAVL 340


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 LGVGETVIGKGIDVDLEVVLTHRIVNEGGQDQEVV 291
           + + E  +GK +++ L   L H +  +  +  E+V
Sbjct: 241 ISLDEPPLGKNLNLSLHASLNHTLTKDQPETYELV 275


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 254 RCVRTTSRSTSIPFPITVSPT 192
           + V +  R  S+P P+T +PT
Sbjct: 145 KLVESFPRGGSLPTPVTPTPT 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,899
Number of Sequences: 438
Number of extensions: 2033
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)