Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_A22
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 122 6e-29
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 30 0.25
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 27 1.8
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 2.3
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 27 2.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.1
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 5.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 25 7.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.2
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 9.5
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.5
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 122 bits (293), Expect = 6e-29
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Frame = +3
Query: 114 FYXGDHCPEIVAAGEKGKVLLGPGL----RKEINGVFITKPGVLRKRTPNTYWVDNYQKR 281
++ G+ P+ + + + G + LGPGL + + ++K G L + N +D+ KR
Sbjct: 13 YFPGERIPDSIIS-QDGSIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKR 71
Query: 282 YVPSRGENVIGTVVQKAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKML 461
Y+P+ + VIG ++ + + +RVD+G + A L+ L+FE T+K+RP + G +VYA++
Sbjct: 72 YIPATNDQVIGQIISRFAEGYRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVS 131
Query: 462 NASKDMEPELVCVD-SHGKKGRLGVLEEGF-VFXCSLNLIRKILNPHCPLLNSLKNEWPF 635
A +DMEPEL C D + GK G L+ G+ + SL+ RK++ P LL +L + PF
Sbjct: 132 LADRDMEPELECFDATTGKAAGYGELKNGYMITGLSLSHCRKLILPKNTLLQTLGSYIPF 191
Query: 636 ELAAG 650
E+A G
Sbjct: 192 EIAVG 196
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 177 GPGLRKEINGVFITKPGVLRKRTPNTYWVDNYQKRYVPSRGENVIGTVVQKAGDIFRVDV 356
G G E G++ + G ++ R V + +YVP G+ +IG + + ++VD+
Sbjct: 73 GHGTYFEDGGIYASVAGSVQ-RVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDI 131
Query: 357 GG--SCAASLSYLSFEGATKKNR 419
G + LS ++ G ++ +
Sbjct: 132 GAKQNAVLMLSSINLPGGIQRRK 154
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 28 GLCIYFVCSFIILTK-IEQKYHERF 99
G C+YF+ S++ +K ++ +Y +RF
Sbjct: 303 GFCLYFILSYMFFSKLLDSRYVQRF 327
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.1 bits (57), Expect = 2.3
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
Frame = +3
Query: 231 LRKRT-PNTYWVDNYQKRYVPSRGENVIGTVVQKAGDIFRVDVG----GSCAASLSYLSF 395
+RK T PN + D + + ++PS+ + + D R + G+ + LS L
Sbjct: 753 IRKITKPNGFTTDQHSQTFIPSQTHTKLDLRLSDVTDSVRSRINVVKFGNLNSLLSCLHE 812
Query: 396 EGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLNLI 575
P+ +T + + K E + V + + +LG +E F LI
Sbjct: 813 LIQPATLTPSFETEKSITMFLGCRDKQAVSEKLEVAALSEMKKLGYIESSSEFGMLAGLI 872
Query: 576 RKILNPHCPLLNSLKNEWPFELAAG 650
+L + PL++ + P ++ G
Sbjct: 873 PLVLLSNFPLIDFFLGKAPTKMVQG 897
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -3
Query: 532 TPSRPFFPCESTHTSSGSISLLAFNIFAYTTSPVLIAGRFFFVAPSNDRYDSDAAQLPPT 353
TP RP ES+ SS S+ F ++ SP+ + +V+PS+ D + P+
Sbjct: 147 TPYRPVAVSESSSRSSFSMGSSEFASSTWSQSPMQSS---LYVSPSSQPLDRFSPASFPS 203
Query: 352 STRKISPAFCTTVPITFS 299
S + ++VP + S
Sbjct: 204 KETLTSSSLSSSVPRSVS 221
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 198 FLCEVQDLVELFLFRQPPRSLDSDLXGKTTSSIET-FMIFL 79
+LC + D V+L L R P S S++ + S ++T F IFL
Sbjct: 21 YLCTLNDYVQLVL-RGSPASSYSNICERLRSDVQTSFSIFL 60
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 496 HTSSGSISLLAFNIFAYTTSPVLIAGRFFFVAPSNDRYDSDAAQLPPTSTR 344
+T G++ + + P G F A N+ D + +LPPT TR
Sbjct: 807 NTDEGNVIERIWEVGPLVDKPEDHCGMTVFAAQMNEITDLEKDKLPPTDTR 857
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 232 NTPGFVIKTPLISLRSPGPSRTFPFSPAATISGQ*SPX*NYI 107
N+P + IS S PS T FSP+A++S + + +Y+
Sbjct: 145 NSPTGTAVSSQISTLSMSPSSTPVFSPSASVSSKVASSVSYV 186
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 344 ENIARFLYHGTDHIFTSRRHIALLII 267
E+I R+LY T+ +FT + + ALL I
Sbjct: 216 ESILRYLYLDTNAVFTKQYNNALLSI 241
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 433 VLIAGRFFFVAPSNDRYDSDAAQLPPTSTRKISPAFCTTVP 311
V+ G +A + + Y S ++ PP+S K+S +F T P
Sbjct: 356 VIGVGSRVVLADTFEDYSSTSSGNPPSSMEKVSGSFTGTKP 396
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 459 LNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLNLIRKILNPHCPLLNSLKN 623
++ SK ++ EL+ D+ +K RLG + E FVF L+ + L SL+N
Sbjct: 222 IDPSKIVDFELILGDA--EKARLGGIHEEFVFSPRLDNLGMTFCASQALTKSLEN 274
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 359 PDVHTENIARFLYHGTDHIFTSRRHIALLIIVHPV 255
P+V + +Y+G H F + LL I+ PV
Sbjct: 218 PEVGSPVFLNLIYNGLSHFFQNILAFTLLSIISPV 252
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 522 GLFFHANQRTQALVPYLCLRLTFSRTQHRLF 430
G+FF A + +PY+ + +T+ TQ LF
Sbjct: 405 GMFFFAKGSSYDDIPYVAIGVTYLITQISLF 435
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 391 RSKERRRKTVPQSKQAMLCTR 453
+ +ERRRKT P+ + L TR
Sbjct: 1385 KQEERRRKTTPEGNRRALRTR 1405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,161
Number of Sequences: 5004
Number of extensions: 63850
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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