Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_A22
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008880-1|AAH08880.1| 275|Homo sapiens exosome component 3 pro... 177 3e-44
BC002437-1|AAH02437.1| 275|Homo sapiens exosome component 3 pro... 177 3e-44
AL138752-7|CAI13880.1| 275|Homo sapiens exosome component 3 pro... 177 3e-44
AF281132-1|AAF82133.1| 275|Homo sapiens exosome component Rrp40... 177 3e-44
AF151860-1|AAD34097.1| 220|Homo sapiens CGI-102 protein protein. 175 1e-43
AF229833-1|AAF42918.1| 79|Homo sapiens apoptosis-related prote... 95 3e-19
M73077-1|AAA58618.1| 835|Homo sapiens glucocorticoid receptor r... 32 1.5
BC150257-1|AAI50258.1| 1499|Homo sapiens GRLF1 protein protein. 32 1.5
AF159851-1|AAF80386.1| 1514|Homo sapiens Rho GAP p190-A protein. 32 1.5
AB051509-1|BAB21813.2| 1499|Homo sapiens KIAA1722 protein protein. 32 1.5
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 31 4.7
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 31 4.7
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 31 4.7
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 31 4.7
AL442003-1|CAH72489.1| 663|Homo sapiens centaurin, gamma-like f... 31 4.7
>BC008880-1|AAH08880.1| 275|Homo sapiens exosome component 3
protein.
Length = 275
Score = 177 bits (431), Expect = 3e-44
Identities = 84/169 (49%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Frame = +3
Query: 165 KVLLGPGLRKEINGVFITKPGVLRKRTPNT------YWVDNYQKRYVPSRGENVIGTVVQ 326
+V+ GPGLR+ + + +TK G LR + P + YWVD+ QKRYVP +G++VIG V
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 327 KAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDS 506
K+GDIF+VDVGGS ASLSYLSFEGATK+NRP ++ GD++Y + + A+KDMEPE+VC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 507 HGKKGRLGVL-EEGFVFXCSLNLIRKILNPHCPLLNSLKNEWPFELAAG 650
G+ +GV+ ++G +F +L LIRK+L P C ++ + +P E+ G
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG 232
>BC002437-1|AAH02437.1| 275|Homo sapiens exosome component 3
protein.
Length = 275
Score = 177 bits (431), Expect = 3e-44
Identities = 84/169 (49%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Frame = +3
Query: 165 KVLLGPGLRKEINGVFITKPGVLRKRTPNT------YWVDNYQKRYVPSRGENVIGTVVQ 326
+V+ GPGLR+ + + +TK G LR + P + YWVD+ QKRYVP +G++VIG V
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 327 KAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDS 506
K+GDIF+VDVGGS ASLSYLSFEGATK+NRP ++ GD++Y + + A+KDMEPE+VC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 507 HGKKGRLGVL-EEGFVFXCSLNLIRKILNPHCPLLNSLKNEWPFELAAG 650
G+ +GV+ ++G +F +L LIRK+L P C ++ + +P E+ G
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG 232
>AL138752-7|CAI13880.1| 275|Homo sapiens exosome component 3
protein.
Length = 275
Score = 177 bits (431), Expect = 3e-44
Identities = 84/169 (49%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Frame = +3
Query: 165 KVLLGPGLRKEINGVFITKPGVLRKRTPNT------YWVDNYQKRYVPSRGENVIGTVVQ 326
+V+ GPGLR+ + + +TK G LR + P + YWVD+ QKRYVP +G++VIG V
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 327 KAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDS 506
K+GDIF+VDVGGS ASLSYLSFEGATK+NRP ++ GD++Y + + A+KDMEPE+VC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 507 HGKKGRLGVL-EEGFVFXCSLNLIRKILNPHCPLLNSLKNEWPFELAAG 650
G+ +GV+ ++G +F +L LIRK+L P C ++ + +P E+ G
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG 232
>AF281132-1|AAF82133.1| 275|Homo sapiens exosome component Rrp40
protein.
Length = 275
Score = 177 bits (431), Expect = 3e-44
Identities = 84/169 (49%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Frame = +3
Query: 165 KVLLGPGLRKEINGVFITKPGVLRKRTPNT------YWVDNYQKRYVPSRGENVIGTVVQ 326
+V+ GPGLR+ + + +TK G LR + P + YWVD+ QKRYVP +G++VIG V
Sbjct: 64 RVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTA 123
Query: 327 KAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDS 506
K+GDIF+VDVGGS ASLSYLSFEGATK+NRP ++ GD++Y + + A+KDMEPE+VC+DS
Sbjct: 124 KSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 183
Query: 507 HGKKGRLGVL-EEGFVFXCSLNLIRKILNPHCPLLNSLKNEWPFELAAG 650
G+ +GV+ ++G +F +L LIRK+L P C ++ + +P E+ G
Sbjct: 184 CGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG 232
>AF151860-1|AAD34097.1| 220|Homo sapiens CGI-102 protein protein.
Length = 220
Score = 175 bits (425), Expect = 1e-43
Identities = 83/165 (50%), Positives = 118/165 (71%), Gaps = 7/165 (4%)
Frame = +3
Query: 177 GPGLRKEINGVFITKPGVLRKRTPNT------YWVDNYQKRYVPSRGENVIGTVVQKAGD 338
GPGLR+ + + +TK G LR + P + YWVD+ QKRYVP +G++VIG V K+GD
Sbjct: 13 GPGLRRCGDRLLVTKCGRLRHKEPGSGGGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGD 72
Query: 339 IFRVDVGGSCAASLSYLSFEGATKKNRPAIKTGDVVYAKMLNASKDMEPELVCVDSHGKK 518
IF+VDVGGS ASLSYLSFEGATK+NRP ++ GD++Y + + A+KDMEPE+VC+DS G+
Sbjct: 73 IFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 132
Query: 519 GRLGVL-EEGFVFXCSLNLIRKILNPHCPLLNSLKNEWPFELAAG 650
+GV+ ++G +F +L LIRK+L P C ++ + +P E+ G
Sbjct: 133 NGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG 177
>AF229833-1|AAF42918.1| 79|Homo sapiens apoptosis-related protein
PNAS-3 protein.
Length = 79
Score = 94.7 bits (225), Expect = 3e-19
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = +3
Query: 255 YWVDNYQKRYVPSRGENVIGTVVQKAGDIFRVDVGGSCAASLSYLSFEGATKKNRPAIK 431
YWVD+ QKRYVP +G++VIG V K+GDIF+VDVGGS ASLSYLSFEGATK+NRP ++
Sbjct: 15 YWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQ 73
>M73077-1|AAA58618.1| 835|Homo sapiens glucocorticoid receptor
repression factor 1 protein.
Length = 835
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = -1
Query: 348 HGKYRPLSVPRYRSHFHL*KAHSASDNCPPSMYLVFVSVIRLVLL*KHR*FLCEVQDLVE 169
H K LSV Y S F + K+ Y+VF S R L R FLCEVQD++
Sbjct: 443 HKKRIELSVLSYHSSFSIRKSRLVHG------YIVFYSAKRKASLAMLRAFLCEVQDIIP 496
Query: 168 LFL 160
+ L
Sbjct: 497 IQL 499
>BC150257-1|AAI50258.1| 1499|Homo sapiens GRLF1 protein protein.
Length = 1499
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = -1
Query: 348 HGKYRPLSVPRYRSHFHL*KAHSASDNCPPSMYLVFVSVIRLVLL*KHR*FLCEVQDLVE 169
H K LSV Y S F + K+ Y+VF S R L R FLCEVQD++
Sbjct: 829 HKKRIELSVLSYHSSFSIRKSRLVHG------YIVFYSAKRKASLAMLRAFLCEVQDIIP 882
Query: 168 LFL 160
+ L
Sbjct: 883 IQL 885
>AF159851-1|AAF80386.1| 1514|Homo sapiens Rho GAP p190-A protein.
Length = 1514
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = -1
Query: 348 HGKYRPLSVPRYRSHFHL*KAHSASDNCPPSMYLVFVSVIRLVLL*KHR*FLCEVQDLVE 169
H K LSV Y S F + K+ Y+VF S R L R FLCEVQD++
Sbjct: 830 HKKRIELSVLSYHSSFSIRKSRLVHG------YIVFYSAKRKASLAMLRAFLCEVQDIIP 883
Query: 168 LFL 160
+ L
Sbjct: 884 IQL 886
>AB051509-1|BAB21813.2| 1499|Homo sapiens KIAA1722 protein protein.
Length = 1499
Score = 32.3 bits (70), Expect = 1.5
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = -1
Query: 348 HGKYRPLSVPRYRSHFHL*KAHSASDNCPPSMYLVFVSVIRLVLL*KHR*FLCEVQDLVE 169
H K LSV Y S F + K+ Y+VF S R L R FLCEVQD++
Sbjct: 829 HKKRIELSVLSYHSSFSIRKSRLVHG------YIVFYSAKRKASLAMLRAFLCEVQDIIP 882
Query: 168 LFL 160
+ L
Sbjct: 883 IQL 885
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 432 TGDVVYAKMLNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLN-LIRKILNPHCPLL 608
TG+V K++ A +M ++ + + GR+ LE+ ++ + LI + + P+L
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML 83
Query: 609 NSLKNE 626
S+KN+
Sbjct: 84 KSMKNK 89
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 432 TGDVVYAKMLNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLN-LIRKILNPHCPLL 608
TG+V K++ A +M ++ + + GR+ LE+ ++ + LI + + P+L
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML 83
Query: 609 NSLKNE 626
S+KN+
Sbjct: 84 KSMKNK 89
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 432 TGDVVYAKMLNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLN-LIRKILNPHCPLL 608
TG+V K++ A +M ++ + + GR+ LE+ ++ + LI + + P+L
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML 83
Query: 609 NSLKNE 626
S+KN+
Sbjct: 84 KSMKNK 89
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 432 TGDVVYAKMLNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLN-LIRKILNPHCPLL 608
TG+V K++ A +M ++ + + GR+ LE+ ++ + LI + + P+L
Sbjct: 24 TGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML 83
Query: 609 NSLKNE 626
S+KN+
Sbjct: 84 KSMKNK 89
>AL442003-1|CAH72489.1| 663|Homo sapiens centaurin, gamma-like
family, member 3 protein.
Length = 663
Score = 30.7 bits (66), Expect = 4.7
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 450 AKMLNASKDMEPELVCVDSHGKKGRLGVLEEGFVFXCSLNLIRKILNPHCPLLNSLK-NE 626
A L + ++M CVD + + L G + + I + L PH + SL+ ++
Sbjct: 441 AMALQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGPHLSRVRSLELDD 500
Query: 627 WPFEL 641
WP EL
Sbjct: 501 WPVEL 505
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,793,182
Number of Sequences: 237096
Number of extensions: 2198116
Number of successful extensions: 4867
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4857
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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