Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A20
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    26   5.0  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   5.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.0  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   6.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.5  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   8.7  

>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 336 IHTKREGIHIIKRDQ 380
           I+ KREGIHII  DQ
Sbjct: 75  IYGKREGIHIISLDQ 89


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 413 LDSFFNEGA---TILIPFDDM-YTFSFGVYL*EPILIVLQLREVTMP*KLLGLISSL 255
           LDS  NE A   T+ I  D   Y  SFG  +  P L  LQ R +      LGL+ +L
Sbjct: 241 LDSLINESAVLTTMDITTDGFGYMLSFGDLVWVPFLYSLQARYLAFHPVDLGLVKTL 297


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 488 ITGNPFPKCTNIFTTSFSCI*RATSLDSFFNEGATILIP 372
           +T  P P   N+ TTSFS     TS  S  +   T ++P
Sbjct: 34  VTPTPLPSA-NVTTTSFSSASTETSTHSVTSTNITSIVP 71


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 VRSCGIVNFEGVKLFKMDQFQN 249
           V++  I+NFE VK F  D F+N
Sbjct: 446 VQNDAIMNFETVKNFDADDFEN 467


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 290 MP*KLLGLISSLLPF*N*SILNNFTP 213
           MP KLLG+I+ +LP    SIL +  P
Sbjct: 418 MPPKLLGIITGILPSVALSILMSLVP 443


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 232 MDQFQNGSREEISPSSFQGIVTSLNCRTIRIGSYRYTPKEKVYISSK 372
           M+++ N  R  +  +S   I+  +  RT+ +     TP+E + + SK
Sbjct: 151 MEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSK 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,402
Number of Sequences: 5004
Number of extensions: 50981
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)