Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A20
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 181 GLTELLRFTLIRVSEHFRISKKIYPSYSLIFLFYVYAFF*QSVLFHKCDHH 29
           G+T +L  T + +     + K  YP+    F+F  +AF   +++     H+
Sbjct: 249 GITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQFAVVHY 299


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 511  ICS*YTRRSQVILSQNVLIFLPLPSAVSEGQLL 413
            +CS Y  +  VI S  V  +LPL +A   G L+
Sbjct: 975  VCSDYFSQGGVIESIMVSDYLPLVAATLSGVLV 1007


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 92  ISILRLRIFLTKRFISQMRSPH 27
           +S L  R+F + ++I  ++SP+
Sbjct: 308 LSSLAFRVFQSTQYIRHIKSPY 329


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 556 GPYYDPMSKTDP 591
           GP YDPM+   P
Sbjct: 552 GPSYDPMAVVSP 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,463
Number of Sequences: 438
Number of extensions: 3745
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)