Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A17
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    29   0.75 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   3.0  

>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 182 NSYEDSSAKALNNKFAARCSKYVSLRNLYSSIIALINEQVLSLLILRYRYRVLQYAVPSL 361
           NS+   S  ALN  F    S  +     Y  + AL++  +L L      +R+L   + S 
Sbjct: 277 NSHHAVSLLALNGLFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDLFLSST 336

Query: 362 SLQRSVLAR-VTRLGRHA 412
            L  +++A  + RL R A
Sbjct: 337 HLPATLIASFIKRLARLA 354


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 194 DSSAKALNNKFAARCSKYVSLRNLYSSIIALINEQVLSLLILRYRYRVLQYAVPSLSLQR 373
           +S +  L ++ AA   K  S ++LY+++   +N     LLI     R LQ    S+  + 
Sbjct: 292 ESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSEL 351

Query: 374 SVL 382
            V+
Sbjct: 352 QVV 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,602
Number of Sequences: 5004
Number of extensions: 37474
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)