Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_A17
(642 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein. 30 2.3
AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein. 30 2.3
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein. 30 2.3
AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF... 30 2.3
AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD... 30 2.3
AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC... 30 2.3
AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB... 30 2.3
AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA... 30 2.3
AY118738-1|AAM50598.1| 87|Drosophila melanogaster GH04760p pro... 29 5.4
AE014298-2028|AAN09586.2| 3269|Drosophila melanogaster CG32602-P... 29 5.4
AL022017-1|CAA17680.1| 139|Drosophila melanogaster EG:190E7.1 p... 29 7.1
AE014298-176|AAF45602.1| 139|Drosophila melanogaster CG18091-PA... 29 7.1
AE014296-1061|AAF50702.3| 866|Drosophila melanogaster CG6619-PA... 29 7.1
>AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.
Length = 1027
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 628 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 687
Query: 499 Q 501
Q
Sbjct: 688 Q 688
>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
Length = 1023
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 624 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 683
Query: 499 Q 501
Q
Sbjct: 684 Q 684
>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
Length = 1015
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 624 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 683
Query: 499 Q 501
Q
Sbjct: 684 Q 684
>AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF,
isoform F protein.
Length = 961
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 562 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 621
Query: 499 Q 501
Q
Sbjct: 622 Q 622
>AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD,
isoform D protein.
Length = 1027
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 628 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 687
Query: 499 Q 501
Q
Sbjct: 688 Q 688
>AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC,
isoform C protein.
Length = 1027
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 628 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 687
Query: 499 Q 501
Q
Sbjct: 688 Q 688
>AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB,
isoform B protein.
Length = 1023
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 624 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 683
Query: 499 Q 501
Q
Sbjct: 684 Q 684
>AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA,
isoform A protein.
Length = 1023
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 SIPCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPL--PVKRLHEALQNAQVKR 498
+IP V PFPVA +S + P TVV QS L ++R H+ LQ +++
Sbjct: 624 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQ 683
Query: 499 Q 501
Q
Sbjct: 684 Q 684
>AY118738-1|AAM50598.1| 87|Drosophila melanogaster GH04760p
protein.
Length = 87
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 467 CSLFTGRGLWPRLST--TVAGRAGRVA*LWRALTVAATGKG 351
C+ G G PR S+ T AGR+G + LWR A G
Sbjct: 15 CARHGGSGCCPRTSSSRTSAGRSGTTSGLWRTPAAAGNTSG 55
>AE014298-2028|AAN09586.2| 3269|Drosophila melanogaster CG32602-PA
protein.
Length = 3269
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 510 PPVPCSPDHPSS----NSPTSRAPTHQSAAKHCATKHRCNN 620
PP PC P HP++ + TS APT AT H C +
Sbjct: 54 PPPPC-PSHPTTPACEHRITSPAPTKPHCPHATATPHNCGH 93
>AL022017-1|CAA17680.1| 139|Drosophila melanogaster EG:190E7.1
protein.
Length = 139
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = +1
Query: 358 PVAATVSARQSHATRPARPATVVDNLGQSPLPVKRLHEALQNA 486
PVAAT+S S A R VV L +SPLP RL NA
Sbjct: 71 PVAATLSWPTSSACRGDVLVLVVLLLAKSPLPWARLERRAFNA 113
>AE014298-176|AAF45602.1| 139|Drosophila melanogaster CG18091-PA
protein.
Length = 139
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = +1
Query: 358 PVAATVSARQSHATRPARPATVVDNLGQSPLPVKRLHEALQNA 486
PVAAT+S S A R VV L +SPLP RL NA
Sbjct: 71 PVAATLSWPTSSACRGDVLVLVVLLLAKSPLPWARLERRAFNA 113
>AE014296-1061|AAF50702.3| 866|Drosophila melanogaster CG6619-PA
protein.
Length = 866
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 510 PPVPCSPDHPSSNSPTSRAPTHQSAAKHCATKHRCN 617
PP C P + P + +S+ KHC H CN
Sbjct: 408 PPRTCEKHKPPAKPP--KPEKEKSSGKHCHVGHSCN 441
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,033,247
Number of Sequences: 53049
Number of extensions: 442209
Number of successful extensions: 1941
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1938
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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