Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A17
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81472-2|CAB03890.1|  156|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81472-2|CAB03890.1|  156|Caenorhabditis elegans Hypothetical
           protein C16D6.3 protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 293 EQVLSLLILRYRYRVLQYAVPSLSLQRSVLARVTRLGRHAQPQSWI 430
           E++L L+ILR     L  A  +   Q+SVL R+ +   HA  + W+
Sbjct: 22  ERLLVLVILRTALHYLGEAGQNEVAQQSVLERLEKKKEHANVRKWL 67


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 331 PCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPLPVKRL 465
           P   VRGP   +A  +AR +   + A+ + V  ++ Q PLP+ +L
Sbjct: 351 PQQPVRGPGKHSAAAAARATPKPKKAKMSNVQMSIVQPPLPLHQL 395


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 331  PCLTVRGPFPVAATVSARQSHATRPARPATVVDNLGQSPLPVKRL 465
            P   VRGP   +A  +AR +   + A+ + V  ++ Q PLP+ +L
Sbjct: 1730 PQQPVRGPGKHSAAAAARATPKPKKAKMSNVQMSIVQPPLPLHQL 1774


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,243
Number of Sequences: 27780
Number of extensions: 222697
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)