Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A17
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.62 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 581 CSKALCNKASVQQH 622
           C K LC+KAS+++H
Sbjct: 11  CGKVLCSKASLKRH 24


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 367 ATVSARQSHATRPARPATVVDNL 435
           A++S+  SH   P  PAT +  +
Sbjct: 639 ASLSSTHSHPHEPGAPATTITTI 661


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 382 EH*PLQRQGRDRV 344
           EH PLQRQ  D V
Sbjct: 333 EHQPLQRQNMDMV 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,309
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)