Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P06_F_A03
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...   208   5e-55
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    28   1.0  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    28   1.3  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    26   4.1  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    26   4.1  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   9.5  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   9.5  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score =  208 bits (508), Expect = 5e-55
 Identities = 93/150 (62%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
 Frame = +2

Query: 206 EIKSHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQ-RYSLHNNTLPLLTTKRVFT 382
           E ++ +E QYL LI  I+++G  R DRTG GT S+F   Q R+SL NNTLPLLTTKRVF 
Sbjct: 324 EYRNTEEEQYLNLIRYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNTLPLLTTKRVFL 383

Query: 383 RGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRH 562
           RGV+EELLW I G T++  L+ KG+HIWD NGSR FLD+ G TDR+ GDLGP+YGFQWRH
Sbjct: 384 RGVLEELLWFIHGDTNANHLSEKGIHIWDGNGSREFLDSRGLTDRKVGDLGPIYGFQWRH 443

Query: 563 SGAKYIDCQTDYTGQGIDQLQSVIDSIKNN 652
            GA+Y+DC TDYT +G+DQL  VI ++K N
Sbjct: 444 FGAQYVDCDTDYTNKGVDQLAQVISTLKLN 473


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 456 TPLAANAFESVDPE--IIHSSSSITPL 382
           TP   +  ES+ PE  II SSSS+TPL
Sbjct: 367 TPKLTSLMESIFPEQTIIRSSSSVTPL 393


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 549 NPYTGPRSPSSLSVNPKLSRKFLDPFASQMCTPLAANAFESV 424
           +P T P    S +V   +S ++LDPF     T     +F SV
Sbjct: 191 SPVTQPELDQSSAVEESISTRYLDPFKLTDPTAYRVESFTSV 232


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 188 THNNDVEIKSHDEYQYLKLID 250
           THN DV +   DEYQ + + D
Sbjct: 78  THNMDVPVVKRDEYQLVNIDD 98


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 188 THNNDVEIKSHDEYQYLKLID 250
           THN DV +   DEYQ + + D
Sbjct: 78  THNMDVPVVKRDEYQLVNIDD 98


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 349 RVIVKRVPLHRSKYRKGTYPRSINSFIARFYDL 251
           R+I+K +P +  K +  TY +S+    A   D+
Sbjct: 3   RIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDV 35


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 489 KFLDPFASQMCTPLAANAFESVDPEIIHSS 400
           KFLD    Q+ T  A N  + V  +I+H S
Sbjct: 389 KFLDTLGRQVFTYEALNVTDGVPSDIVHIS 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,584
Number of Sequences: 5004
Number of extensions: 52762
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)