Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P06_F_A03
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 199 2e-51
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 141 5e-34
03_05_0935 - 28948368-28948769,28949028-28949120,28949240-289493... 33 0.26
07_01_0300 - 2164188-2165437,2165568-2165652 31 1.1
01_06_1047 + 34092702-34094249 30 1.4
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 29 2.4
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700 29 2.4
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191... 28 5.6
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 7.4
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 28 7.4
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 27 9.8
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 199 bits (485), Expect = 2e-51
Identities = 93/154 (60%), Positives = 111/154 (72%), Gaps = 9/154 (5%)
Frame = +2
Query: 218 HDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKR-------- 373
H+EY YL L++ II+SG ++ DRTG GTLS FG R++L N+ PLLTTK+
Sbjct: 236 HEEYHYLNLVEDIIRSGAQKNDRTGTGTLSKFGCQMRFNLRNS-FPLLTTKKLAPLKLYN 294
Query: 374 -VFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGF 550
VF RGV+EELLW ISGST +K L KG+HIWD N SR +LD++G REEGDLGPVYGF
Sbjct: 295 KVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSVGLAHREEGDLGPVYGF 354
Query: 551 QWRHSGAKYIDCQTDYTGQGIDQLQSVIDSIKNN 652
QWRH GA+Y D DYTG+G DQL VID IKNN
Sbjct: 355 QWRHFGAEYTDMHADYTGKGFDQLMDVIDKIKNN 388
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 141 bits (341), Expect = 5e-34
Identities = 74/145 (51%), Positives = 89/145 (61%)
Frame = +2
Query: 218 HDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVIE 397
H+EYQYL L+ II++G K+ DRTG GT+S FG R++L N PLLTTKRVF RGV+E
Sbjct: 209 HEEYQYLNLVQDIIRNGAKKNDRTGTGTVSKFGCQMRFNLRRN-FPLLTTKRVFWRGVLE 267
Query: 398 ELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRHSGAKY 577
ELLW ISGST++K L KG+HIWD N SR +LD +Y
Sbjct: 268 ELLWFISGSTNAKVLQEKGIHIWDGNASRQYLD-------------------------RY 302
Query: 578 IDCQTDYTGQGIDQLQSVIDSIKNN 652
D DY G+G DQL VID IKNN
Sbjct: 303 TDMHADYVGKGFDQLMDVIDKIKNN 327
>03_05_0935 -
28948368-28948769,28949028-28949120,28949240-28949329,
28949413-28949477,28950442-28950512,28950610-28950648,
28950832-28951250
Length = 392
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 170 RKKYIMTHNNDVEIKSHDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNT 349
R ++ +H N + E K DQ++ +G RV RTG L + +Q++ LH T
Sbjct: 271 RYQFTASHRNGPPVSRDPEALKAKYSDQLVFTGSIRV-RTGYEILRLTSYLQQH-LHRIT 328
Query: 350 LPLL 361
+P+L
Sbjct: 329 VPML 332
>07_01_0300 - 2164188-2165437,2165568-2165652
Length = 444
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +2
Query: 218 HDEYQYLKLIDQIIKSGDKRVDRTGVGTLSIFGAMQRYSLHNNTLPLLTTKRVFTRGVIE 397
H+E Q+ K++ IK G+ +D ++ FG + R + +T ++ R T G
Sbjct: 225 HEECQH-KIVHYDIKPGNVLLDGGLTPKVADFG-LARLASRGDTHVSVSGMRG-TPGYAA 281
Query: 398 ELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 505
+WM +G T+ + + GVH+++ R LD+ G
Sbjct: 282 PEMWMQAGVTEKCDVYSFGVHLFEIVRRRRNLDDGG 317
>01_06_1047 + 34092702-34094249
Length = 515
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = +2
Query: 248 DQIIKSGDKRVDRTGVGTLSIFGAMQRYS---LHNNTLPLLTTKRVFTRGVIEELLWMIS 418
D+II+ +R + G LS F A ++S LH+ L+ R T + W++S
Sbjct: 263 DRIIRERRERGEARGDDFLSRFAAGDKHSDESLHDVITNLVLAGRETTASALTWFFWLVS 322
Query: 419 GSTDSKALAAKGVH-IWDANGSRNFLDNLGFTDREEGDL 532
G D + + + + A+ S F+ E D+
Sbjct: 323 GRPDVEDNIVREIRAVRRASSSNGVTSGAAFSPHELRDM 361
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 353 PLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRN 487
P+ T K + LL +++ STD+K ++ G+HI ++ S N
Sbjct: 535 PIATQKVAVDNHASQHLLSLLTKSTDNKGSSSFGLHIGSSDRSHN 579
>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
Length = 813
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 334 RVPLHRSKYRKGTYPRSINSFIAR 263
R LHRSKY+K +YP + F+ R
Sbjct: 177 RSALHRSKYKKPSYPGWVQYFLKR 200
>01_02_0070 -
10817675-10818024,10818228-10818893,10819094-10819124,
10820038-10820164,10820279-10820736
Length = 543
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 561 CLH*NPYTGPRSPSSLSVNPKLSR 490
CLH NP T P PS++ + K SR
Sbjct: 503 CLHPNPSTRPTMPSAIHLFSKFSR 526
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 359 LTTKRVFT-RGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLG 535
LT +++T G++E + + GS D A G HI G + ++++ D ++
Sbjct: 526 LTEYQIYTLHGILENAPYNLHGSNDFAVGAVDGTHIPVTVGVDSAIEHMNRHDETTKNVL 585
Query: 536 PVYGFQWR 559
+ GF R
Sbjct: 586 TIVGFDGR 593
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 421 PGDHPQ*FFYNTSCKYSFSCEKWKRVIVKRVPLHRSKYRKGTYPRSI-NSFIARFYDLVD 245
P D Q + N CKY + K R VKR P + TY + + F A +D +
Sbjct: 449 PQDAAQLYAANEICKYGWVYHKELRQWVKRAPNTTPLVKTTTYEQGLCYLFDANIWDAIP 508
Query: 244 K 242
K
Sbjct: 509 K 509
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 407 WMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGF 550
W G+T + ++ + A RN L+ LG T R + D+G + F
Sbjct: 51 WCACGTTSTPIWRSRSGNTTPAPLVRNELERLGLTTRMDTDIGIIIDF 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,228
Number of Sequences: 37544
Number of extensions: 298017
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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