Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_P23
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   161   6e-41
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    27   2.3  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   4.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   5.4  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   7.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   9.5  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   9.5  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  161 bits (391), Expect = 6e-41
 Identities = 70/102 (68%), Positives = 83/102 (81%)
 Frame = +3

Query: 150 GNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 329
           G+ + G  +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+
Sbjct: 6   GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWD 65

Query: 330 DDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 455
           ++TLF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 66  EETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 391 YLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIF 498
           +L   +R  S+++ +  SNLL  N  +++N   SIF
Sbjct: 326 FLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIF 361


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 316 PLALLASEYENPAAWPVFRPKNP 248
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 241 FGPTLCLPPASTVWHWAHRCTKIFFP 164
           +GP L + PAST+ +W    T+ F P
Sbjct: 891 WGPFLVIAPASTLHNWQQEITR-FVP 915


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 252 FFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLEN 359
           FFG +TG A  F+Y  + +AK   +N   +   LEN
Sbjct: 56  FFGSQTGTAEDFAYRFSTEAKA-NFNLTNMVFDLEN 90


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 345 EYLENPKKYIPGTKMVFAGLKKANERADL 431
           EY+EN   ++ GT+M    L   NE   L
Sbjct: 489 EYIENSGNFVVGTEMSIYNLPGENEEDKL 517


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
 Frame = +1

Query: 121  YKNLKWVYLQETLKMERKFLYNDVPSATLLKLVANTK*DRIYMD----SLAEKLARLQDS 288
            Y+ +  +   ET   +RK++Y D      L+     +  R  +D    S AEK+A   + 
Sbjct: 744  YREVSDIQFDETGNKKRKYMYGDEDE---LEQEQEERRRRAQLDREFKSFAEKIAEASEG 800

Query: 289  HTPMPIKLR--ALHGMTTLSLNILRIPRNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSN 462
               + I  R  A +G+   S N+L  P    L     L D+   +  L  + I++L    
Sbjct: 801  RIELDIPFRELAFNGVPFRS-NVLLQPTTDCLV---QLTDTPFTVITLNEIEIAHLERVQ 856

Query: 463  FKVIENSIRSIFHNF 507
            F +    +  IF +F
Sbjct: 857  FGLKNFDLVFIFQDF 871


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 73  NLVILANLKKFGCYINYKNLKWVYLQETLKM 165
           +L +L  LK+FGC + + +    Y+  T K+
Sbjct: 20  HLTMLYGLKRFGCRLYHHSKSTRYIDATAKV 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,739
Number of Sequences: 5004
Number of extensions: 53001
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)