Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_P15
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    29   0.80 
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    28   1.1  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    28   1.4  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   3.2  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   4.2  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    26   5.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.6  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    25   7.4  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   9.8  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +3

Query: 24   WG*QSYSNIQCQRTRPEHM*WSYLQSVS*H*GRHNKDSSWLIARVIYHIHSWVQQKQYI 200
            WG ++ S  + Q+ R  ++   Y+  VS    RH K+S+ LI  ++YHI + +    +I
Sbjct: 848  WGNRAKSIPKSQQVRSFYINDLYILPVS----RHLKNSALLIPSILYHIENLLVASSFI 902


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 354 KGPRFELGDFCVKLGSVTMNQNFKGILIEVEYRPCVMANAVWGLLREF 497
           +G  +E+G F V + +V     +KGIL  V Y      +    +++EF
Sbjct: 86  EGSIYEVGSFKVAIANVLQKSVWKGILFHVTYDGTESVDLARPIIQEF 133


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 324 TSKKQTKIESKGPRFELGDFCVKLGSVTM 410
           T  KQ  +   GPRFE+  F + LG+V M
Sbjct: 239 TGPKQIILSEAGPRFEMKLFEITLGTVDM 267


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 26  GVTVLQQYPVPENKTGTYVVELLTKRILALGATQQGQFLVDCESYL-SH 169
           GV V   +     +  T V +LL   + +L  TQQ Q + D ++YL SH
Sbjct: 374 GVFVYMYFQSFIAEKSTSVADLLDTAVYSLTTTQQVQLVEDLQNYLISH 422


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 447 YRPCVMANAVWGLLREFLQGLLGPTV 524
           Y  CV   + W LL+  LQ L+G  V
Sbjct: 330 YEECVKPKSTWALLKPHLQLLIGSFV 355


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +2

Query: 71  GTYVVELLTKRILALGATQQGQFLVDCESYLSHPLMGTTKTVHILHNSEQPASVFSILEK 250
           G + +E++T+++  LGAT      +  E+ +SH ++       +   S     +  +  K
Sbjct: 173 GMFSMEIVTEQLRLLGATVHASLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPK 232

Query: 251 W 253
           W
Sbjct: 233 W 233


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 161  LSHPLMGTTKTVHILHNSEQPASVFSILEKWHEKYSR 271
            L  P   T   + IL NS+ P+ +FS+ ++  + + R
Sbjct: 1111 LGTPNFSTMSFLEILFNSQLPSFIFSMTQREADNFGR 1147


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 147 STRNCPCCVAPNAKIRFVSNSTTYVPVLFSG 55
           S RNCP   AP  ++   +  T +VP+   G
Sbjct: 293 SFRNCPMADAPMLQVLEKAAQTVFVPLTVGG 323


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 158 YLSHPLMGTTKTVHILHNSEQPAS 229
           YLSH + G  K++HI     +P S
Sbjct: 82  YLSHRIHGLRKSLHITQRGGKPKS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,367
Number of Sequences: 5004
Number of extensions: 53723
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)