Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_P15
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006701-3|AAF60394.2|  198|Caenorhabditis elegans Mediator prot...    56   3e-08
Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    27   9.1  

>AC006701-3|AAF60394.2|  198|Caenorhabditis elegans Mediator protein
           20 protein.
          Length = 198

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
 Frame = +3

Query: 258 KNIHVIADGLFDLLMMKLSQHYTSKKQTKIESKGPRFEL-GDFCVKLGSVTMNQNFKGIL 434
           K+   + D  FDL++ KLS    +    KIE  G  + L  D+ +++G+ T     KG++
Sbjct: 73  KSPKAVCDRGFDLILSKLSSGLIADNAGKIEIIGNEYSLYKDWMIRVGTATQGTTVKGVV 132

Query: 435 IEVEYRPCVMANAVWGLLREFLQGLLGPTVPVQPPQHLISRMNEIYTPXDT 587
           +E+EY P ++      ++ EF++ +        P    I+   E YT  DT
Sbjct: 133 VEIEYDPSIIVIQCKDMMIEFVKSVFNKYHETLPEIFKITEKPESYTALDT 183


>Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical
           protein T28C6.8 protein.
          Length = 119

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -2

Query: 153 SQSTRNCPCCVAPNAKIRFVSNSTTYVPVLFSGTGYCC 40
           + S  +CP C     K RF   +  Y    F    YCC
Sbjct: 5   TSSNLSCPACTQKKVKSRFSWRAILYAIFCFPCGIYCC 42


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 207 CNICTVFVVPMSGCDK*LSQSTRNCPCCVAPNAKIRFVSNSTTYVPVLFSGTGY 46
           CN C   V    G  K    STR+C  C A   K  F  NS     + +  + Y
Sbjct: 741 CNKCPSVVGLFEGAIKVKVDSTRSCEQCDAQFIKAEFKPNSGKPGAIEYESSSY 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,617
Number of Sequences: 27780
Number of extensions: 296470
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)