Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_P12
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 91 1e-19
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 37 0.003
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 29 0.59
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 28 1.4
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.5
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 9.5
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.5
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 91.1 bits (216), Expect = 1e-19
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 1/173 (0%)
Frame = +1
Query: 124 RKMGIIPQKEAEFSEADIVNMIEDT-IQQKEAEKQKQXXXXXXXXXXXXXXXXXXAVIEE 300
R GI+P+KE D+ ++++D + K+ + + ++
Sbjct: 14 RSKGILPEKEP-----DVDDVLDDALVDAKQLAHENRLENKDLDELAELEDEEDDEFLQM 68
Query: 301 YRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQH 480
YR KR+ E K K +FG V +S +Y EV A ++++VV+H+++ + C L+
Sbjct: 69 YRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEVTDASKEVFVVVHMFQDSLPACKLLAAI 128
Query: 481 LRELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHELRG 639
L LA +P KF+K + + N+PE +P+L +Y G+++QQ + L G
Sbjct: 129 LERLAPMYPQIKFVKIPGKQAVENYPEAMMPTLLIYGHGDLQQQILTLATLGG 181
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 87 NPNEDTEWNDTXSKDG 134
NP+EDTEWND G
Sbjct: 2 NPDEDTEWNDILRSKG 17
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 36.7 bits (81), Expect = 0.003
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = +1
Query: 298 EYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQ 477
E +K A ++ EK + V + V + + + VVIH Y +C +I+
Sbjct: 117 EMLKKEFARVEAAKEKGHM-QFLTVENEREVMDFTLSSKK--VVIHFYHPDFIRCKIIDS 173
Query: 478 HLRELAVKFPYTKFLK---AIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHEL 633
HL ++A TKF++ A A + + LP++ Y ++ + +G +L
Sbjct: 174 HLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADL 228
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 112 TIPXRKMGIIPQKEAEFSEADIV 180
T+P + IIP+K+A+FSE D+V
Sbjct: 92 TVPHVHVHIIPRKKADFSENDLV 114
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 505 PYTKFLKAIAQTCIPNFPERNLPSL 579
P K + ++C+PN PE+ PSL
Sbjct: 237 PMETLKKYVLESCVPNMPEKLRPSL 261
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 AVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYV 390
+ +EE+RR EI K K FG E SG DY+
Sbjct: 72 STLEEWRRHLKEEIGKSDRKALFGNRDETSG-DYI 105
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 375 WSRLCAGG*QGWSRHLGGHSFVQTGNTTMCTNKSTSTRISSQVS 506
+ L GG WS +L G+ +QT ++ + +TS+ SS S
Sbjct: 102 YGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPS 145
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 72 FNKMQNPNEDTEWNDTXSKDGYYTAERSGVFGGRY 176
F+K + +W+ KDG R G F GR+
Sbjct: 34 FSKGDRLGKIADWSVDQPKDGREQRGRQGAFAGRF 68
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 10 KFPEKLEQVYVFQLLEF*FVNLIKCRTPMKIQNGTIPXRKMGIIPQKEAEFSEADIVNMI 189
K PE L +Y FQ+L+ + I+ I K G I K A+F A +N +
Sbjct: 102 KIPENLVALYTFQVLQGLLYLHNQGVIHRDIKGANILTTKDGTI--KLADFGVATKINAL 159
Query: 190 ED 195
ED
Sbjct: 160 ED 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,927
Number of Sequences: 5004
Number of extensions: 50658
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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