Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_P12
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0604 - 4493868-4494028,4494538-4494746,4495860-4496003,449... 125 3e-29
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 31 0.80
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.3
03_05_1105 + 30438140-30438350,30438448-30438926 28 5.6
06_03_0113 - 16786063-16786131,16786229-16786327,16786413-167864... 27 9.9
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 27 9.9
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 27 9.9
>01_01_0604 -
4493868-4494028,4494538-4494746,4495860-4496003,
4496298-4496539
Length = 251
Score = 125 bits (302), Expect = 3e-29
Identities = 52/120 (43%), Positives = 83/120 (69%)
Frame = +1
Query: 292 IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALI 471
+E+YRR RLAE+++ ++ +FG + ++G D+V+EV++A D+WVV+ LYK GI +C L+
Sbjct: 77 LEQYRRMRLAELREAAKAAKFGSIVPITGSDFVREVSQAPSDVWVVVFLYKDGIPECGLL 136
Query: 472 NQHLRELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHELRGTSLT 651
L ELA ++P TKF+K I+ CIPN+P+RN+P++ VY +K +VG + G T
Sbjct: 137 QTCLDELATRYPATKFVKIISTDCIPNYPDRNVPTILVYNNSAVKGTYVGLQKFGGKRCT 196
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +1
Query: 286 AVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCA 465
A+ E+ + ++L E ++S +P E REV ++ + K G + + L ++G+
Sbjct: 551 AIAEKEKTEKLIEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGT 610
Query: 466 LINQHL 483
+ N HL
Sbjct: 611 VENMHL 616
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +1
Query: 355 GEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKA-I 531
GEV ++G + Q VIH QQC I+ + L ++P FLK I
Sbjct: 568 GEVEAITGMEQFQMATSLPGVS--VIHFMTPLNQQCCKISPFVNTLCTRYPSISFLKVDI 625
Query: 532 AQTCIPNFPE--RNLPSLFVYFEGEMKQQFV 618
+++ E R +P+ +Y G ++ +
Sbjct: 626 SESPAVARAENVRTVPTFKIYKNGTRVKEMI 656
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 235 IIVFVFQLPFAVLCPLSCSQYRPPKTPLLSAV 140
+ +F+ LPF VLCPL R P LL A+
Sbjct: 60 LYIFLIILPFIVLCPLYYYYQRHPVNLLLLAL 91
>06_03_0113 -
16786063-16786131,16786229-16786327,16786413-16786469,
16786795-16786909,16787331-16787413,16787481-16787531,
16787914-16787951,16788153-16788213
Length = 190
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 212 SFCCIVSSIMFTI---SASENSASFCGIIPIFRXGI-VPFCIFIGVL 84
+FCC+ S +++ I A E S S + F G + F +FI L
Sbjct: 109 AFCCVASEVLYIILFLFADEKSTSLLNVCRCFLKGSPLTFFVFISTL 155
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +1
Query: 328 KKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFP 507
K S + F E + +V VNK WV+ L K C L++ + + FP
Sbjct: 1156 KLASMRMTFVEFGQNPATTFVDLVNKTNSTAWVLEELLK---SDCILLDN--KNIPASFP 1210
Query: 508 YTKF 519
+ KF
Sbjct: 1211 FDKF 1214
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 292 IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYV-QEVNKAG 411
+E YRR+R ++ E R+V +YV QE+ KAG
Sbjct: 70 VEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAG 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,913
Number of Sequences: 37544
Number of extensions: 303530
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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