Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_P08
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 164 1e-41
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.0
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 2.3
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 27 3.1
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 7.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.5
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 9.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 9.5
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 164 bits (398), Expect = 1e-41
Identities = 76/108 (70%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Frame = +1
Query: 142 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 321
L + E+GQ YAQVTKMLGNGR+EA CFDG+KRL HIRGKLRKKVWINQGDIIL+ LR++Q
Sbjct: 26 LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQ 85
Query: 322 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE-DIEF 462
D K DVILKYT DEAR LK GE PET +INET + +G D+ D EF
Sbjct: 86 DEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 234 FDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYD 55
FDA H + + LCD L V + F++ I+ FS + F++ L+D
Sbjct: 418 FDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWD 477
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -1
Query: 177 LGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYDFYYK 43
+ + + + + + FF F F S +FS F+F+F + ++F+++
Sbjct: 93 IAIFIHPYDSNVVPFFCFFFYFS---LFSFFSFLFTSLHFNFFFR 134
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 319 QDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGL 444
++ K++V ++YT D A GE ++ E V+YS+ L
Sbjct: 511 RNRKSNVKIEYTEDFATGFAISGEISHSINNLEFVLYSLSSL 552
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 104 GEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACVTSEGNYEK 268
G E+ + + +W ++ S S CS+ A W +L+++ CV + G ++
Sbjct: 220 GGEKWNVAAECDAWQANNSELS---SSICSISANWSTLSLLSTEGCVYAFGRCDR 271
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 208 EAMCFDGIKRLCHIRG 255
+A C +G + LCH+ G
Sbjct: 623 DAQCLEGFRALCHLEG 638
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 128 LKNVSWSLRKTDKSTPKSQRCSVMA 202
L++ +W + D ST RCS++A
Sbjct: 1223 LRSKNWKYLRLDGSTKSDDRCSLLA 1247
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 105 PPIFSSFTFVFRHVLYDFYYKHKQVTL 25
P + SSF +F H+LY Y+ + L
Sbjct: 160 PMVVSSFAHIFGHLLYCMAYRANWIYL 186
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 413 LMRTVSGNSPYVFRFLASSGVYFKMTSAF 327
L++ V N ++F LA SGV FK+ + F
Sbjct: 539 LIKFVWRNKVFLFGILALSGVIFKLINFF 567
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 80 KVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQR 187
K KEEK GE + KLKN +L + PK +
Sbjct: 259 KSKEEKSHGENESGGKLKNKMSTLFRRKTIMPKKDK 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,311
Number of Sequences: 5004
Number of extensions: 42986
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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