Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_P06
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560... 31 1.1
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 1.1
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 30 1.4
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 30 1.4
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 30 1.9
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 29 3.2
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 29 4.3
06_01_0866 + 6582131-6583294 28 7.5
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 7.5
01_06_0926 + 33075575-33076618 28 7.5
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 27 9.9
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 27 9.9
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 27 9.9
>05_03_0250 +
10955281-10955419,10955524-10955727,10955985-10956065,
10956147-10956287,10956378-10956410,10956809-10956909,
10957282-10957912,10959378-10959514
Length = 488
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 7 MHDRGTDSVEPLQCKLLTFNSVYNDSFCC 93
+HDR D PL+CK LT S D FCC
Sbjct: 376 LHDRVGDFNTPLRCKKLT-QSYEVDGFCC 403
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 510 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 617
G + V+ + + G S Y+ P N SY+ +V CV +
Sbjct: 590 GALLVMTSILQLGQSSYLPHPIDNDSYDRIVLCVRL 625
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 638 RTDKLSLYFHTTHDSLVAFVLKGSNYIMGTARID 537
R DK S T H SLV+ ++G+NY + R+D
Sbjct: 267 RLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD 300
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 339 VRLVTAATGSMGPADGALLLSPSRKHFL 256
VR V A + S+GP D + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 510 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 617
G + ++ + + G S Y+ P N SY+ +V CV +
Sbjct: 592 GALLIMVSILQLGQSSYLPHPIDNDSYDRIVLCVRL 627
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +2
Query: 212 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 379
PL VL GS+ R R RR PS+ P P AA + R PHT S +T
Sbjct: 38 PLPPAAVL-GSSPAARTRLRP---RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 390 SEFKVTDDG*VCGTVREVRLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 223
SE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 35 SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 352 NSARGASSHRRYRQHGSSG 296
N A+G+S HR+++ HG G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 212 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 322
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 300 ADGALLLSPSRK-HFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSAR 163
+D ++LL P+R+ H F+ P P G P +SP +P ++A+
Sbjct: 220 SDSSILLFPNRRNHVGFVIRVELGPPDEPRGDPLLSPVTHTPKSTAQ 266
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 393 GSEFKVTDDG*VCGTVREVRLVTAATGSMGPADGALLLSPSRK 265
GS F DDG C T +L ++++ + A ++ LSP ++
Sbjct: 427 GSGFMREDDGSCCSTAESAKLSSSSSSNHQDAGVSIYLSPIKE 469
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 243 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTK 139
+PG PR P+ PQK +P + N V + K
Sbjct: 519 QPGYAPRPQINRPAPQPQKHAPSGNTAPNSVTSFK 553
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 174 TSARQNKVNNTKXKVIQPMKELKLFARATETVVIDRIE 61
T+ R +N+ K ++P L FA+ E DRIE
Sbjct: 335 TTQRSESMNHVLKKYVKPSSSLNGFAKRYENFYNDRIE 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,724
Number of Sequences: 37544
Number of extensions: 345648
Number of successful extensions: 1053
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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