Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_P04
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   1.8  
SPAC1486.08 |||mitochondrial inner membrane protein involved in ...    26   4.1  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 288 RRFYFMKSIVKICGYVYIVALTWLVGVT 205
           +  +F+K+I+ +  Y+Y++   W+V  T
Sbjct: 27  KNMFFLKNIIVLSNYLYLLYKAWIVCTT 54


>SPAC1486.08 |||mitochondrial inner membrane protein involved in
          cytochrome c oxidase assembly Cox16|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 86 LFYKHKTWYTLRSRKA 39
          LFY+ K+WY L+++K+
Sbjct: 2  LFYRFKSWYRLQAKKS 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,782
Number of Sequences: 5004
Number of extensions: 55575
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)