Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_P04
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 29 3.2
08_02_0977 + 23227081-23228004,23228244-23228315,23229788-232298... 29 4.2
03_01_0166 + 1362254-1363138,1363225-1363545 28 5.6
01_01_1082 - 8516525-8517409 28 5.6
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583 28 7.4
02_04_0442 - 22962457-22962616,22962854-22962927 28 7.4
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 28 7.4
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623... 27 9.8
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 27 9.8
06_03_0271 - 19041491-19042069 27 9.8
05_04_0117 + 18136189-18137073,18137160-18137516 27 9.8
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 424 GACSMWSLVGTQSSPS-HSASAFNIKNIIFYFT 519
G+ S WS +GT+ P+ H S F+ + FY+T
Sbjct: 204 GSSSTWSSLGTEEPPNRHGLSCFDCVDGCFYWT 236
>08_02_0977 +
23227081-23228004,23228244-23228315,23229788-23229841,
23231763-23231840,23233080-23233173,23233352-23233423,
23233537-23233584,23233608-23233777,23234016-23234088,
23234850-23235199
Length = 644
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 277 VKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKR 414
V G+++ AT C + EK + TL+ + A N+ Y Q KR
Sbjct: 355 VGRDGVHYSATKCTKYTISTEKVMITLIHGKQVLEAVNNPYGQKKR 400
>03_01_0166 + 1362254-1363138,1363225-1363545
Length = 401
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 196 PICGDANQPGQCHNVHISTNFYYGFHEVKTSGINH 300
P CG+A H V + ++F+YG + TS H
Sbjct: 41 PACGEAFPSPDTHEVVVFSHFFYGGFALPTSKFFH 75
>01_01_1082 - 8516525-8517409
Length = 294
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 196 PICGDANQPGQCHNVHISTNFYYGFHEVKTS 288
P CG+A H V + ++F+YG + TS
Sbjct: 40 PACGEAFPTSDMHEVVVFSHFFYGGFSLPTS 70
>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
Length = 602
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 411 LALWIAAVISTSFSSCGYKGVHVLF 337
L LW+ AV+ SF GY GV LF
Sbjct: 111 LPLWLVAVVGASFGLVGY-GVQFLF 134
>02_04_0442 - 22962457-22962616,22962854-22962927
Length = 77
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 499 FLC*RQKQSGLDLTVYQQDSTWNKHLLENACSVDSRCYQHF 377
FLC R+ G D+ +Y+ D + CSVD RC Q F
Sbjct: 9 FLCRRELADGKDIYMYRGDRAF--------CSVDCRCKQIF 41
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 297 VDTRRFYFMKSIVKICGYVYIVALTWLVGV 208
+DT F+ + I G +Y + TW+VG+
Sbjct: 65 LDTMMGVFVPCLQNILGIIYYIRFTWIVGM 94
>12_02_0095 +
13559997-13560232,13561295-13561683,13562092-13562387,
13562475-13563361,13563440-13563562,13563693-13563981,
13564211-13564249
Length = 752
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 414 TLALWIAAVISTSFSSCGYKGVHV---LFNWDFLHLTI 310
T A WI VI+ +S+C Y + ++W +HL I
Sbjct: 643 TFAHWILLVITPKWSTCHYLNSRIDKNAYDWTPIHLAI 680
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -1
Query: 466 DLTVYQQDSTWNKHLLENACSVDSRCYQHFFF*LWLQGCSRSFQLGLPASHNLLPCG*YP 287
D++V + W + + N SVD RC+ +WLQ + G P+ LPC +
Sbjct: 656 DVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQ--VWLQPATP--PKGGPSVGGSLPCPQFR 711
Query: 286 TFLLHEI 266
F++ +
Sbjct: 712 PFIMEHV 718
>06_03_0271 - 19041491-19042069
Length = 192
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 196 PICGDANQPGQCHNVHISTNFYYGFHEVKTS 288
P CG+A H V + ++F+YG + TS
Sbjct: 17 PACGEAFPTPDTHEVVVFSHFFYGGFSLPTS 47
>05_04_0117 + 18136189-18137073,18137160-18137516
Length = 413
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 196 PICGDANQPGQCHNVHISTNFYYGFHEVKTS 288
P CG+A H V + ++F+YG + TS
Sbjct: 41 PACGEAFPSPDTHEVAVFSHFFYGGFALPTS 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,513
Number of Sequences: 37544
Number of extensions: 333724
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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