Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_P04
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-1|AAP40514.1|  368|Caenorhabditis elegans Serpentine re...    29   2.9  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   3.8  

>AF039042-1|AAP40514.1|  368|Caenorhabditis elegans Serpentine
           receptor, class w protein103 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -3

Query: 137 IGWHFMSYLVFLNXLKTLFYKHKTWYTLRSRKAXIKTNNACFQ 9
           +GW+ +  +  ++ L+T FY+ + W  + +R   +  N A +Q
Sbjct: 147 VGWYMILVVSCISALQTAFYQSR-WMVVENRSIPLPVNCALYQ 188


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +1

Query: 235 NVHISTNFYYGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRSADNSGYPQS 408
           NV IS       + V   G   +++  ++ ++P +KNVN+++T+     +D +  PQ+
Sbjct: 127 NVQISALRQGSDNSVVAIGNGAISSTSDLGQMPTDKNVNSVITSDNTTYSDVTTAPQA 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,440
Number of Sequences: 27780
Number of extensions: 315369
Number of successful extensions: 691
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)