Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_P04
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 494 MLKAEAEWLGLDCVPTRL 441
           ML   + WLGLD +P R+
Sbjct: 215 MLSWFSFWLGLDAIPGRV 232


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 277 VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 369
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 277 VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 369
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 343 NVNTLVTTARKRSADNSGYPQSK 411
           NVN L+   R  ++DN    Q+K
Sbjct: 573 NVNDLIMNTRCANSDNQNNNQNK 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,360
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)