Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    28   1.0  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   7.2  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 247 IKAKYIHNNYMTVLFVNFYGILDQYLSNDSN 155
           +K+ Y H N  ++  VNFYG  D+Y+ + S+
Sbjct: 661 VKSYYGHCNVESIKNVNFYGQNDEYVMSGSD 691


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 449 NVYNKIFTINS*DIICDITKVINHNVPKKIGKFCSQGWQSFNFLLFHSQTV 601
           N ++KI  +     I D+ KV+ +   +K+  FC+   Q+F  L +  +T+
Sbjct: 57  NCHSKIPIVKKLKTI-DLDKVVKYADDQKVDSFCNNALQNFK-LCYDDETL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,283
Number of Sequences: 5004
Number of extensions: 40557
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)