Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O17
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0720 - 5943243-5944399,5946142-5946271                           28   5.6  
11_01_0788 + 6599962-6602700                                           28   7.4  

>11_01_0720 - 5943243-5944399,5946142-5946271
          Length = 428

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 90  FFLYTRLCYAEKYVTLHC*RLMLLSFDKY 176
           F L+   C  ++ V +HC + ++ SFDK+
Sbjct: 7   FLLFLIACVVDRSVNVHCEKQLVSSFDKH 35


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 613 LHNYHSLRMKEQEIKRLPAL*TKFSYFFRHIVIDYFGDIT 494
           L N H+L +K+ +I++LP    K     RH++ D + D T
Sbjct: 622 LSNLHTLDIKQTKIEKLPKGIAKVKK-LRHLIADRYADET 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,986
Number of Sequences: 37544
Number of extensions: 187173
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)