Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_O16
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032378-1|AAH32378.1| 194|Homo sapiens mitochondrial ribosomal... 66 1e-10
BC012489-1|AAH12489.1| 193|Homo sapiens mitochondrial ribosomal... 66 1e-10
BC009451-1|AAH09451.1| 160|Homo sapiens Unknown (protein for IM... 66 1e-10
AK223152-1|BAD96872.1| 194|Homo sapiens mitochondrial ribosomal... 66 1e-10
AK222933-1|BAD96653.1| 194|Homo sapiens mitochondrial ribosomal... 66 1e-10
AK026165-1|BAB15381.1| 194|Homo sapiens protein ( Homo sapiens ... 66 1e-10
AF320777-1|AAK97314.1| 193|Homo sapiens cervical cancer proto-o... 66 1e-10
AB049944-1|BAB40997.1| 194|Homo sapiens mitochondrial ribosomal... 66 1e-10
>BC032378-1|AAH32378.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 protein.
Length = 194
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 142 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 194
Score = 56.0 bits (129), Expect = 1e-07
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 238 TKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 411
TK +++P + E + G ++++PI +I+ SHNNT + + SCG EGF
Sbjct: 58 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 117
Query: 412 KNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 573
+N KKG +A +G+ + LG + L GG E
Sbjct: 118 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLE 171
>BC012489-1|AAH12489.1| 193|Homo sapiens mitochondrial ribosomal
protein S11 protein.
Length = 193
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 141 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 193
Score = 56.0 bits (129), Expect = 1e-07
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 238 TKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 411
TK +++P + E + G ++++PI +I+ SHNNT + + SCG EGF
Sbjct: 57 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 116
Query: 412 KNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 573
+N KKG +A +G+ + LG + L GG E
Sbjct: 117 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLE 170
>BC009451-1|AAH09451.1| 160|Homo sapiens Unknown (protein for
IMAGE:3531918) protein.
Length = 160
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 108 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 160
Score = 33.9 bits (74), Expect = 0.51
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +1
Query: 391 SCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGF 570
SCG EGF+N KKG +A +G+ + LG + L GG
Sbjct: 77 SCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGL 136
Query: 571 E 573
E
Sbjct: 137 E 137
>AK223152-1|BAD96872.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 isoform a variant protein.
Length = 194
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 142 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 194
Score = 56.0 bits (129), Expect = 1e-07
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 238 TKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 411
TK +++P + E + G ++++PI +I+ SHNNT + + SCG EGF
Sbjct: 58 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 117
Query: 412 KNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 573
+N KKG +A +G+ + LG + L GG E
Sbjct: 118 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLE 171
>AK222933-1|BAD96653.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 isoform a variant protein.
Length = 194
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 142 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 194
Score = 56.4 bits (130), Expect = 8e-08
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = +1
Query: 205 EKIIDLDSALKTKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKV 378
+K+ + TK +++P + E + G ++++PI +I+ SHNNT + +
Sbjct: 47 QKVEQYAAPSHTKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEP 106
Query: 379 RIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLT 558
SCG EGF+N KKG +A +G+ + LG + L
Sbjct: 107 LAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLI 166
Query: 559 NGGFE 573
GG E
Sbjct: 167 MGGLE 171
>AK026165-1|BAB15381.1| 194|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22512 fis, clone HRC11839. ).
Length = 194
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 142 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 194
Score = 56.4 bits (130), Expect = 8e-08
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = +1
Query: 205 EKIIDLDSALKTKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKV 378
+K+ + TK +++P + E + G ++++PI +I+ SHNNT + +
Sbjct: 47 QKVEQYAAPSHTKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEP 106
Query: 379 RIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLT 558
SCG EGF+N KKG +A +G+ + LG + L
Sbjct: 107 LAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLI 166
Query: 559 NGGFE 573
GG E
Sbjct: 167 MGGLE 171
>AF320777-1|AAK97314.1| 193|Homo sapiens cervical cancer
proto-oncogene 2 protein.
Length = 193
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 141 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 193
Score = 56.0 bits (129), Expect = 1e-07
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 238 TKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 411
TK +++P + E + G ++++PI +I+ SHNNT + + SCG EGF
Sbjct: 57 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 116
Query: 412 KNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 573
+N KKG +A +G+ + LG + L GG E
Sbjct: 117 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLE 170
>AB049944-1|BAB40997.1| 194|Homo sapiens mitochondrial ribosomal
protein S11 protein.
Length = 194
Score = 66.1 bits (154), Expect = 1e-10
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
+G +RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N R RKAR+L
Sbjct: 142 KGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL 194
Score = 56.0 bits (129), Expect = 1e-07
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 238 TKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 411
TK +++P + E + G ++++PI +I+ SHNNT + + SCG EGF
Sbjct: 58 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 117
Query: 412 KNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 573
+N KKG +A +G+ + LG + L GG E
Sbjct: 118 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLE 171
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,672,596
Number of Sequences: 237096
Number of extensions: 1624914
Number of successful extensions: 3037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3037
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -