Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O16
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    27   8.7  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    27   8.7  

>Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical
           protein W04D2.5 protein.
          Length = 208

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/53 (54%), Positives = 41/53 (77%)
 Frame = +2

Query: 485 RGYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPPRARKARRL 643
           RG  TVRV+V+GLGPGR++ VKGL + G+++VSI+D+T +    PR RK RR+
Sbjct: 156 RGIRTVRVQVKGLGPGRMTCVKGLTVAGVHVVSISDHTPLCELGPRPRKIRRI 208



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 33/104 (31%), Positives = 50/104 (48%)
 Frame = +1

Query: 256 PTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXX 435
           PT E+  Q ++G+ Y +LP+  IR S NNT+ T+ +   +V    SC +EGFKN +K   
Sbjct: 80  PTAETLKQQFDGVAYHELPLVYIRASKNNTLVTVMDNKNEVITSTSCRLEGFKNARKKTT 139

Query: 436 XXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 567
                       + V +GI     +   LG   + C + LT  G
Sbjct: 140 IAGQTTGVAAGQRLVRRGIRTVRVQVKGLGPGRMTCVKGLTVAG 183


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 497 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 613
           T  V + GLG   +   K L +GG+  V+I D     W+
Sbjct: 40  TASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWS 78


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 497 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 613
           T  V + GLG   +   K L +GG+  V+I D     W+
Sbjct: 125 TASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKWS 163


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 645  YNLLAFLALGGFHDTCVLSVIETIFKP-PICKPLTADNRPGPKP 517
            Y +   +ALG F+  CVL VI T+  P P   P    +   P P
Sbjct: 1264 YTMTLLVALGVFNGLCVLPVILTLVGPKPELTPTDGSSVLPPPP 1307


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 645  YNLLAFLALGGFHDTCVLSVIETIFKP-PICKPLTADNRPGPKP 517
            Y +   +ALG F+  CVL VI T+  P P   P    +   P P
Sbjct: 1261 YTMTLLVALGVFNGLCVLPVILTLVGPKPELTPTDGSSVLPPPP 1304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,787
Number of Sequences: 27780
Number of extensions: 237335
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)