Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O09
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   214   8e-57
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   1.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   3.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   4.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.2  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  214 bits (523), Expect = 8e-57
 Identities = 92/168 (54%), Positives = 136/168 (80%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           M EAR  ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
           RCDRNI++G+NL ++SK+L+CA ++D VT+KA+D  + +  VFES   +++SDY++KLM+
Sbjct: 61  RCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           +D EHLGIP+ EY  TI MP++EF RI RDL    +S+ I+ +KEGV+
Sbjct: 121 IDQEHLGIPDIEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVR 168


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 391 SLTCCLDSCPLRCSYRSGTC 332
           SL+C  DSC + C    GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 109 LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 222
           L +  N+ +  IH  I+ +EAR++   IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +1

Query: 271  QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNAD 450
            + +D+SH  LV     A  F+ YRC +  SMG+  G +  +     D+   ++       
Sbjct: 957  RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETT 1013

Query: 451  NVTFVFESPNQEKVSDYE 504
              +  FES +     D E
Sbjct: 1014 TASSKFESDDSVDTEDEE 1031


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 523 DLEHLGIP-ETEYSCTIRMPSS 585
           +L  +G+P E EY C  R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 594  SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 463
            ++F  W +      +  NT + + Q+ +LH++++ F+L    KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 196 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 306
           K+V  +  D+LTQ T  C D+ +++++       L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 562 SCIQSLEYLNVQDPNS*ASSRNQR 491
           SC Q LE  N+ DP S  S  N R
Sbjct: 384 SCFQLLERYNLSDPTSDTSMTNVR 407


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 409 DKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 522
           D ++V  +A DN+D   FV E P +   SD ++K   L
Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 163 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQL 270
           FE    R   L +++    D L    FD D+N I++
Sbjct: 227 FEIPSTRPPSLDQLIHLFNDFLRHPVFDFDENAIEM 262


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 44  LSFILHSCFNLFVS*GSLT 100
           LSFIL  CF+LF+S  S +
Sbjct: 192 LSFILFPCFSLFLSSNSFS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,380
Number of Sequences: 5004
Number of extensions: 51752
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)